Locus 4810

Sequence ID 2R_DroMel_CAF1
Location 15,785,468 – 15,785,588
Length 120
Max. P 0.591322
window7726

overview

Window 6

Location 15,785,468 – 15,785,588
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 79.67
Mean single sequence MFE -35.61
Consensus MFE -23.30
Energy contribution -23.94
Covariance contribution 0.65
Combinations/Pair 1.31
Mean z-score -1.37
Structure conservation index 0.65
SVM decision value 0.12
SVM RNA-class probability 0.591322
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 15785468 120 + 20766785
GAGAAGUACUCCUACCGUGGCAUGAUCACCUUCUGCAUUCCCAGAGGGCAGAUUAAGUGGUCCGCGAUCUUCGAGUACAUGGAGAACUUGAAGGAUGAGAUGCAGAUAUUGUACUACUCG
(((.(((((......((((((.(((((.(((((((......)))))))..)))))....).))))).(((((((((.(.....).)))))))))................))))).))). ( -38.10)
>DroGri_CAF1 9678 120 + 1
GAGAAGAACACGUCUCAUGGCUUGGUCACCAUAGCAAUAGCCGACUUCGAACUGAAGUGGUCCACAAUAUUUAAAUAUAUGGAAGAUAAUCGCGACGCCCUCCAAAUAGAGCACUACUCG
(((.((....((((.....((((((...))).)))....(((.(((((.....))))).)((((..((((....)))).))))........))))))..(((......)))..)).))). ( -23.50)
>DroSec_CAF1 8636 120 + 1
GAGAAGUACUCCUACCGCGGCAUGAUCACCUUCUGCAUUCCCAAGGGGCAGAUCAAGUGGUCCGCGAUCUUCGACUACAUGGAGAACUUGAAGGAUGAGCUGCAGAUACUGUACUACUCG
(((.(((((.......(((((....(((((((((((...((....)))))))((((((..((((((.....))......))))..))))))))).)))))))).......))))).))). ( -38.64)
>DroSim_CAF1 8687 120 + 1
GAGAAGUACUCCUACCGCGGCAUGAUCACCUUCUGCAUUCCCAGGGGGCAGAUCAAGUGGUCCGCGAUCUUUGACUACAUGGAGAACUUGAAGGAUGAGCUGCAGAUACUCUACUACUCG
(((.((((.((((..((((((.(((((.(((((((......)))))))..)))))....).))))).(((((........)))))......)))).(((.........))))))).))). ( -34.90)
>DroEre_CAF1 8719 120 + 1
GAGAAGUACUCCUACCGAGGAAUGAUCACCUUCUGCAUUCCGAAAGGGCAGAUCAAGUGGUCCGAGAUCUUCGCCUACAUGGAGAACUUAAAGGAGCAAAUGCAGAUAUUGUACUACUCG
(((.(((((((((..((((((..((((((..(((((...((....)))))))....)))))).....))))))((.....)).........))))((....)).......))))).))). ( -38.60)
>DroYak_CAF1 8773 120 + 1
GAUAAGUACUCCUACCGAGGAAUGAUCACCUUCUGCAUUCCGAAGGGGCAGAUCAAGUGGUCUGCGAUCUUCAACUACAUGGAGAACCUAAAGGAGCAAAUGCAGAUACUGUACUACUCG
((..(((((((((....))))..........((((((((((...((((((((((....)))))))..((((((......)))))).)))...)))....)))))))....)))))..)). ( -39.90)
>consensus
GAGAAGUACUCCUACCGAGGCAUGAUCACCUUCUGCAUUCCCAAGGGGCAGAUCAAGUGGUCCGCGAUCUUCGACUACAUGGAGAACUUGAAGGAUGAGAUGCAGAUACUGUACUACUCG
(((.(((((((((..(((((....(((((..(((((...((....)))))))....)))))))))).((((((......))))))......))))...............))))).))). (-23.30 = -23.94 +   0.65)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:29:46 2006