| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 2,691,570 – 2,691,680 |
| Length | 110 |
| Max. P | 0.528176 |
| Location | 2,691,570 – 2,691,680 |
|---|---|
| Length | 110 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 86.24 |
| Mean single sequence MFE | -50.18 |
| Consensus MFE | -37.82 |
| Energy contribution | -38.47 |
| Covariance contribution | 0.64 |
| Combinations/Pair | 1.21 |
| Mean z-score | -2.23 |
| Structure conservation index | 0.75 |
| SVM decision value | -0.01 |
| SVM RNA-class probability | 0.528176 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 2691570 110 + 20766785 ----------AUGGCGGUGGAGUUGUGGCUGCUUCAGGUGGAGCCGCGAAUCUUUUGCGGCCGCCAGGAGUCCUUACUGCUCCGCCUUUACGGACGUUGCACUCCGCCAGCUGACUACAU ----------.((((((((((((.((((..(((((.((((..(((((((.....))))))))))).)))))..)))).)))))))).....(((........)))))))........... ( -49.10) >DroSec_CAF1 6355 110 + 1 ----------AUGGCGGUGGAGUUGUGGCUGCUUCAGGUGGAGCCGCGAAUCUUUUGCGGCCGCCAGGAGUCGCUACUGCUCCGCCUUUACGGACGUUGCACUCCACCAGCUGACUACAU ----------..(((((((((((.(((((.(((((.((((..(((((((.....))))))))))).))))).))))).((..((((.....)).))..)))))))))).)))........ ( -52.90) >DroSim_CAF1 3747 110 + 1 ----------AUGGCGGUGGAGUUGUGGCUGCUUCAGGUGGAGCCGCGAAUCUUCUGCGGCCGACAGGAGUCGCUACUACUCCGCCUUUACGGACGUUGCACUCCGCCAGCUGACUACAU ----------.((((((((((((.(((((.(((((..((.(.((((((.......))))))).)).))))).))))).)))))))).....(((........)))))))........... ( -51.30) >DroEre_CAF1 4127 110 + 1 ----------AUGGCAGUGGAGUUGUGGCUGCUGCAGGUGGAGCCGCGCAUCUUUUGCGGCCGCCAGGAGUCCCUGCUGCUCCGCUUGUACGGACGUUGCACUCCGCCAGCGGACUACAU ----------..(((((.(((.((.((((.((((((((.(((((...)).))))))))))).)))).)).))))))))..((((((....((((........))))..))))))...... ( -49.20) >DroYak_CAF1 3832 110 + 1 ----------AUGGCGGUGGAGUUGUGGCUGCUUCAGGUGGAGCCGCGCAUCUUUUGCGGUCGCCAGGAGUCCUUGCUGCUCCGCCUUUACGGACGCUGUACUCCGCCAGCGGACUACAU ----------...((((((((((.(((.(((....(((((((((.(((((.....)))((.(.......).))..)).)))))))))...))).)))...)))))))).))......... ( -47.90) >DroAna_CAF1 14808 120 + 1 AAAGGUUGCCAUGGCCGUGGAGCUGUGGCUGCUGCUCGUGGAGCCCCGAAUCUUCUGCAGCCGGCAGGAGUCGCUGCUACUGCGUUUCCAUGGCCGCUGCACGCCUCCAGCGGACUACAU ...((((((..((((((((((((.(((((.((.((((...))))...((..(((((((.....))))))))))).))))).))...))))))))))..)).(((.....))))))).... ( -50.70) >consensus __________AUGGCGGUGGAGUUGUGGCUGCUUCAGGUGGAGCCGCGAAUCUUUUGCGGCCGCCAGGAGUCCCUACUGCUCCGCCUUUACGGACGUUGCACUCCGCCAGCGGACUACAU ...........((((((((((((.((((..(((((.((((..((((((.......)))))))))).)))))..)))).)))))))).....(((........)))))))........... (-37.82 = -38.47 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:40 2006