| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 15,779,084 – 15,779,203 |
| Length | 119 |
| Max. P | 0.648596 |
| Location | 15,779,084 – 15,779,203 |
|---|---|
| Length | 119 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 83.67 |
| Mean single sequence MFE | -32.62 |
| Consensus MFE | -31.23 |
| Energy contribution | -31.03 |
| Covariance contribution | -0.19 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.28 |
| Structure conservation index | 0.96 |
| SVM decision value | 0.24 |
| SVM RNA-class probability | 0.648596 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 15779084 119 - 20766785 UGGCGGUCAUGGCGAUGCCAACCUUGCGCUUGCCGUCGAUGUUCGUAUUCAUGAUACGCAGGAUGUGCUGGAACUUCUCUGGGAUGACGAGCGACUGCAAGAAUGCAAAGA-AAAAACAU ..((((((.((((...)))).......(((((.((((......((((((...))))))(((((.((......)).)).))).)))).))))))))))).............-........ ( -33.70) >DroVir_CAF1 2712 108 - 1 UGGCAGUCAUGGCAAUGCCAACUUUGCGCUUGCCAUCGAUGUUCGUAUUCAUGAUACGAAGAAUGUGUUGGAACUUCUCUGGGAUGACGAGCGACUGCAA------------AAACAAAU ..((((((.((((...)))).......(((((.((((..(.((((((((...)))))))).).....(..((.....))..))))).)))))))))))..------------........ ( -35.20) >DroGri_CAF1 2226 117 - 1 UUGCGGUCAUUGCGAUGCCAACUUUGCGUUUGCCAUCAAUGUUCGUACUCAUGAUACGAAGAAUGUGCUGGAACUUCUCUGGGAUGACGAGCGACUGCAAAAUUAUUA--A-CAAUUUAA ((((((((...((((........))))(((((.((((..(.(((((((....).)))))).).....(..((.....))..))))).)))))))))))))........--.-........ ( -33.60) >DroWil_CAF1 4846 120 - 1 UGGCAGUCAUGGCAAUUCCUACCUUGCGCUUACCAUCGAUGUUCGUAUUCAUGAUACGAAGAAUGUGCUGGAACUUCUCAGGGAUAACGAGAGACUGCAAGAAAACAUAAACAAAUUCAU ..((((((...((((........)))).....(((.((.(.((((((((...)))))))).)...)).)))....((((.(......)))))))))))...................... ( -26.70) >DroMoj_CAF1 2159 112 - 1 UGGCAGUCAUUGCGAUGCCAACCUUGCGUUUGCCAUCAAUGUUCGUAUUCAUGAUACGAAGAAUGUGCUGGAACUUCUCUGGGAUGACGAGCGACUGCAA-----UUC--A-AAACAUAU ..((((((...((((........))))(((((.((((..(.((((((((...)))))))).).....(..((.....))..))))).)))))))))))..-----...--.-........ ( -33.30) >DroAna_CAF1 2305 118 - 1 UGGCAGUCAUGGCAAUGCCCACCUUGCGCUUACCAUCGAUGUUCGUAUUCAUGAUACGAAGGAUGUGCUGGAACUUCUCUGGGAUGACGAGCGACUGCAAAAACAAAG-AG-GAACAAAU ..((((((...((((........))))((((..((((..(.((((((((...)))))))).).....(..((.....))..)))))..))))))))))..........-..-........ ( -33.20) >consensus UGGCAGUCAUGGCAAUGCCAACCUUGCGCUUGCCAUCGAUGUUCGUAUUCAUGAUACGAAGAAUGUGCUGGAACUUCUCUGGGAUGACGAGCGACUGCAA_AA_ACAA__A_AAACAAAU ..((((((...((((........))))(((((.((((..(.((((((((...)))))))).).....(..((.....))..))))).)))))))))))...................... (-31.23 = -31.03 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:29:42 2006