| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 15,768,211 – 15,768,309 |
| Length | 98 |
| Max. P | 0.994059 |
| Location | 15,768,211 – 15,768,309 |
|---|---|
| Length | 98 |
| Sequences | 4 |
| Columns | 102 |
| Reading direction | forward |
| Mean pairwise identity | 92.90 |
| Mean single sequence MFE | -24.32 |
| Consensus MFE | -22.96 |
| Energy contribution | -22.90 |
| Covariance contribution | -0.06 |
| Combinations/Pair | 1.11 |
| Mean z-score | -2.62 |
| Structure conservation index | 0.94 |
| SVM decision value | 2.45 |
| SVM RNA-class probability | 0.994059 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 15768211 98 + 20766785 AAAUAACGAAACCUGUUAUUAUUUGGAAUGCAAAUUUUCGGGUAACUGAAAAUAAAACGGUCAAAGCCUAAUUAAGCUGGCAUUCCGAUA-CGAUUCGA--- .(((((((.....)))))))..(((((((((..((((((((....))))))))....((((..((......))..)))))))))))))..-........--- ( -25.60) >DroSec_CAF1 16505 101 + 1 AAAUGACGAAACCUGUUAUUAUUUGGGAUGCAAAUUUUCGGGUAACUGAAAAUAAAACGGUCAAAGCCUAAUUAAGCUGGCAUUCCAAUA-CGAUUCGAAUC .(((((((.....)))))))..(((((((((..((((((((....))))))))....((((..((......))..)))))))))))))..-........... ( -25.50) >DroSim_CAF1 17479 101 + 1 AAAUAACGAAACCUGUUAUUAUUUGGGAUGCAAAUUUUCGGGUAACUGAAAAUAAAACGGUCAAAGCCUAAUUAAGCUGGCAUUCCAAUA-CGAUACGAUUC .(((((((.....)))))))..(((((((((..((((((((....))))))))....((((..((......))..)))))))))))))..-........... ( -25.40) >DroEre_CAF1 17277 99 + 1 AAAUAACGAAACCUGUUAUUAUUUGGGAUGCAAAUUUUGGGGUAACUGAAAAUAAAACGGUCAGUGCCUAAUUAAGCUGGAAUUCCAAUUCCGAUUCGA--- .(((((((.....)))))))..(((((((((.....(((((...(((((...........))))).)))))....))(((....)))))))))).....--- ( -20.80) >consensus AAAUAACGAAACCUGUUAUUAUUUGGGAUGCAAAUUUUCGGGUAACUGAAAAUAAAACGGUCAAAGCCUAAUUAAGCUGGCAUUCCAAUA_CGAUUCGA___ .(((((((.....)))))))..(((((((((..((((((((....)))))))).....(((....)))...........))))))))).............. (-22.96 = -22.90 + -0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:29:33 2006