| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 15,761,204 – 15,761,324 |
| Length | 120 |
| Max. P | 0.939877 |
| Location | 15,761,204 – 15,761,324 |
|---|---|
| Length | 120 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 95.42 |
| Mean single sequence MFE | -49.26 |
| Consensus MFE | -45.08 |
| Energy contribution | -45.68 |
| Covariance contribution | 0.60 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.48 |
| Structure conservation index | 0.92 |
| SVM decision value | 1.28 |
| SVM RNA-class probability | 0.939877 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 15761204 120 + 20766785 AAGGUGUCGUUUAGAUUGCACUCCUUGAACUUGUUGCCCACGAUGGGCAGCAGAUACGGAUGGCAGCCGCACUUCUUGACGAUGGCCUCCGUCUGGCAGGCGAGAAGGCAGGCGGCCUGG ...(((((((((((..........)))))).((((((((.....)))))))))))))....(((.(((((.(((((((.(....(((.......))).).))))))))).))).)))... ( -48.70) >DroSec_CAF1 9679 120 + 1 AAGGUGUCGUUUAGAUUGCACUCCUUGAACUUGUUGCCCACGAUGGGCAGCAGAUACGGAUGGCAGCCGCACUUCUGGACGAUGGCCUCCGUCUGGCAGGCGAGGAGACAGGCGGCCUGG ...(((((((((((..........)))))).((((((((.....)))))))))))))....(((.(((((.((.(..((((........))))..).))))..(....).))).)))... ( -47.70) >DroSim_CAF1 10557 120 + 1 AAGGUGUCGUUUAGAUUGCACUCCUUGAACUUGUUGCCCACAAUGGGCAGCAGAUACGGAUGGGAGCCGCACUUCUGGACGAUGGCCUCCGUCUGGCAGGCGAGAAGGCAGGCGGCCUGA .((((((((((((((.(((.(((((.....(((((((((.....)))))))))........)))))..)))..)))))))))).((((((.(((.(....).))).)).)))).)))).. ( -54.12) >DroEre_CAF1 10254 120 + 1 AAGGUGUCGUUUAGAUUGCACUCCUUGAACUUGUUGCCCACGAUGGGCAGCAAAUAUGGAUGACAGCCGCACUUCUGGACGAUGGCCGCCGUCUGGCAGGCGAGGAGGCAAGCGGCCUGG .....((((((((((.(((...........(((((((((.....)))))))))....((.......)))))..))))))))))(((((((..((.(....).))..)))....))))... ( -46.90) >DroYak_CAF1 10393 120 + 1 AAGGUGUCGUUGAGAUUGCACUCCUUGAACUUGUUGCCCACGAUGGGCAGCAGAUAUGGAUGGCAGCCGCACUUCUGGACGAUGGCCUCCGUCUGGCAGGCGAGAAGGCAGGCGGCCUGC .((((((((((.(((.(((..(((......(((((((((.....)))))))))....))).((...)))))..))).)))))).((((((.(((.(....).))).)).)))).)))).. ( -48.90) >consensus AAGGUGUCGUUUAGAUUGCACUCCUUGAACUUGUUGCCCACGAUGGGCAGCAGAUACGGAUGGCAGCCGCACUUCUGGACGAUGGCCUCCGUCUGGCAGGCGAGAAGGCAGGCGGCCUGG .((((((((((((((.(((...........(((((((((.....)))))))))....((.......)))))..)))))))))).((((((.(((.(....).))).)).)))).)))).. (-45.08 = -45.68 + 0.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:29:21 2006