| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 15,757,741 – 15,757,855 |
| Length | 114 |
| Max. P | 0.571230 |
| Location | 15,757,741 – 15,757,855 |
|---|---|
| Length | 114 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 79.49 |
| Mean single sequence MFE | -34.85 |
| Consensus MFE | -24.94 |
| Energy contribution | -24.25 |
| Covariance contribution | -0.69 |
| Combinations/Pair | 1.34 |
| Mean z-score | -1.12 |
| Structure conservation index | 0.72 |
| SVM decision value | 0.08 |
| SVM RNA-class probability | 0.571230 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 15757741 114 + 20766785 ------UUAAUGGUAUUCUACAGUUUUGACUCUGUGAGCCAGUUGAAGGACUGCGGCUUGCGAUCGGAUGACGGGCUGAUGGCCACAUUAAUGAUGGUUGGCCUGUCGGUGAGCUGAUUG ------......(((..(..(((((((....(((.....)))....)))))))..)..)))((((((.(((((((((...(((((((....)).)))))))))))))).....)))))). ( -37.20) >DroVir_CAF1 8360 115 + 1 -----GUGUUUGUUGUUUUACAGUUUGGACUCUGUGAGCCAAUUGAACGAUUGUGGCUUUCGAUCUGAAGAGGGGCUGAUUGCCACAUUUAUAAUGGUGGGCCUAUCCGUUAACUGAUUG -----..((((((((.(((((((........))))))).))).)))))((.((((((..(((..((......))..)))..)))))).)).((((((.........))))))........ ( -29.70) >DroPse_CAF1 5963 111 + 1 ---------AUUGUAUCCUACAGUUUGGACUCUGUGAGCCAGUUAAAAGACUGUGGUUUGCGAUCCGAGGAUGGACUGAUUGCCACAUUGAUGAUGGUUGGCCUGUCCGUAAGCUGGUUG ---------((((((..(((((((((.....(((.....))).....)))))))))..))))))(((...((((((.(...((((((....)).))))...)..))))))....)))... ( -32.90) >DroWil_CAF1 11392 119 + 1 -AUCGAUUGAAAUUAUCCUACAGCUUGGACUCUGUGAGCCAAUUAAAGGAUUGCGGCUUACGAUCCGAUGAUGGACUAAUGGCCACAUUGAUAAUGGUGGGCCUGUCCGUUAAUUGAUUG -..((((..(..............(((((.((.(((((((((((....))))..))))))))))))))((((((((....((((.((((......)))))))).)))))))).)..)))) ( -38.50) >DroMoj_CAF1 8389 120 + 1 AAUCAAUGUGCUUUGUUUUAUAGUUUGGACUCUGUGAGCCAGUUGAACGAUUGUGGCUUGCGAUCAGAGGAGGGACUGAUAGCCACAUUUAUGAUGGUAGGCCUAUCCGUCAGCUGGUUG .................((((((........))))))(((((((((..(((...(((((((.((((......((........)).......)))).))))))).)))..))))))))).. ( -36.92) >DroPer_CAF1 7580 111 + 1 ---------AUUGUAUCCUACAGUUUGGACUCUGUGAGCCAGUUAAAAGACUGUGGUUUGCGAUCCGAGGAUGGACUGAUCGCCACAUUGAUGAUGGUUGGCCUGUCCGUAAGCUGGUUG ---------((((((..(((((((((.....(((.....))).....)))))))))..))))))(((...((((((.(..(((((((....)).))).))..).))))))....)))... ( -33.90) >consensus ______U__AUUGUAUCCUACAGUUUGGACUCUGUGAGCCAGUUAAAAGACUGUGGCUUGCGAUCCGAGGAUGGACUGAUGGCCACAUUGAUGAUGGUUGGCCUGUCCGUAAGCUGAUUG ....................(((((((((.((.(((((((((((....))))..))))))))))))))..((((((.....(((.((((...))))...)))..))))))..)))).... (-24.94 = -24.25 + -0.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:29:18 2006