Locus 479

Sequence ID 2R_DroMel_CAF1
Location 2,688,400 – 2,688,518
Length 118
Max. P 0.637211
window909

overview

Window 9

Location 2,688,400 – 2,688,518
Length 118
Sequences 6
Columns 118
Reading direction reverse
Mean pairwise identity 85.31
Mean single sequence MFE -49.98
Consensus MFE -38.13
Energy contribution -38.63
Covariance contribution 0.50
Combinations/Pair 1.35
Mean z-score -2.22
Structure conservation index 0.76
SVM decision value 0.21
SVM RNA-class probability 0.637211
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 2688400 118 - 20766785
UGUCGAAUAGAGUGCUUCUUGUCCUCAAGUCGUUCGCUCAAGACCUGGGAGCGCUGCCACUGGCUCUCGAUCUCGUUGGAAUGAAGGCGGGUGGCAGCCAGCUCCUUUUGGGUGACCU
...(((...(((..(.....)..)))...))).(((((((((....(((((((((((((((.((..(((.(((....))).)))..)).)))))))))..)))))))))))))))... ( -53.20)
>DroSec_CAF1 2022 118 - 1
UGUCGAAUAGAGUGCUUCUUGUCCUCAAGUCGUUCGCCCAAGACCUGGGAGCGCUGCCACUGGCUCUCGAUCUCGUGGGAAUGCAGGCGGGUGGCAGCCAGCUCCUUUUGGGUGACCU
...(((...(((..(.....)..)))...))).(((((((((....(((((((((((((((.(((..((.(((....))).))..))).)))))))))..)))))))))))))))... ( -55.30)
>DroSim_CAF1 576 118 - 1
UGUCGAAUAGAGUGCUUCUUGUCCUCAAGUCGUUCGCCCAAGACCUGGGAGCGCUGCCACUGGCUCUCGAUCUCGUUGGAAUGCAGGCGGGUGGCAGCCAGCUCCUUUUGGGUGACCU
...(((...(((..(.....)..)))...))).(((((((((....(((((((((((((((.(((..((.(((....))).))..))).)))))))))..)))))))))))))))... ( -53.60)
>DroEre_CAF1 881 118 - 1
UGGCGAAUAGAGUGCUUCUUUUCCUCGAGUCGUUCGUUCAAGACACGGGAGCGCUGCCACUGGCUCUCGAUCUCGUUGGGUGGCAGGCGGGUGGCAGCCAGCUCCUUUUGGGUGACCG
..((((...(((...........)))...))))(((..((((....(((((((((((((((.(((..(.((((....)))).)..))).)))))))))..))))))))))..)))... ( -48.40)
>DroYak_CAF1 576 118 - 1
UGUCGAAUGGAGUGUUUCUUGUCCUCGAGUCGUUCGGUCAGGAACUGGGAGCGCUGCCACUGGCUCUCGAUCUCGUUGGGUGUCAGGCGGGUGGCAGCCAGCUCCUUUUGUGUGACCU
....((((((..((...........))..))))))(((((.(....(((((((((((((((.((.((.(((((.....)).))))))).)))))))))..))))))....).))))). ( -50.80)
>DroAna_CAF1 11330 118 - 1
UGUUGGAUAGACUCCUUCUUCUCCUCGAGUUGCUUAACCAGCACCUCGGAGCGUUGCCACUGGCUCUCGGGGGCAUCGGGGGGCAAGUUUAUGGCAGCUACUUCCUUUUGGGUCACCU
.........(((((......((((..(((.((((.....)))).))))))).(((((((((.((((((.((....)).)))))).)))....))))))...........))))).... ( -38.60)
>consensus
UGUCGAAUAGAGUGCUUCUUGUCCUCAAGUCGUUCGCCCAAGACCUGGGAGCGCUGCCACUGGCUCUCGAUCUCGUUGGAAGGCAGGCGGGUGGCAGCCAGCUCCUUUUGGGUGACCU
...(((...(((..(.....)..)))...))).((((((((((....((((((((((((((.(((.....(((....))).....))).)))))))))..)))))))))))))))... (-38.13 = -38.63 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:38 2006