Locus 4789

Sequence ID 2R_DroMel_CAF1
Location 15,747,653 – 15,747,773
Length 120
Max. P 0.969993
window7693

overview

Window 3

Location 15,747,653 – 15,747,773
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 83.78
Mean single sequence MFE -40.66
Consensus MFE -35.90
Energy contribution -35.90
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -2.15
Structure conservation index 0.88
SVM decision value 1.65
SVM RNA-class probability 0.969993
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 15747653 120 + 20766785
CACCAAGCAUCGGUGGUUCAGUGGUAGAAUGCUCGCCUGCCACGCGGGCGGCCCGGGUUCGAUUCCCGGCCGAUGCAUACGAACUUUUUUUGUCUAACUAUCUGGAUUUAUAAACCUUAA
((((.......))))(((((((((((((((((((((((((...))))))((((.(((.......))))))))).)))).((((.....))))))).)))).))))))............. ( -41.70)
>DroSec_CAF1 526 119 + 1
CACCAAGCAUCGGUGGUUCAGUGGUAGAAUGCUCGCCUGCCACGCGGGCGGCCCGGGUUCGAUUCCCGGCCGAUGCAUAUCAACUUU-UUUGUCAAACUAUCUAGACUUGUAAAACUAAA
...((((..(.((((((((((.(((.((((((((((((((...))))))((((.(((.......))))))))).)))).)).)))..-.)))...))))))).)..)))).......... ( -39.80)
>DroSim_CAF1 522 119 + 1
CACCAAGCAUCGGUGGUUCAGUGGUAGAAUGCUCGCCUGCCACGCGGGCGGCCCGGGUUCGAUUCCCGGCCGAUGCAUACGAACUUU-UUUGUCAAACUAUCUGGUUUGGUAAAACUAAA
((((.......))))((((.(((((((.........)))))))(((..(((((.(((.......)))))))).)))....))))..(-(((..((((((....))))))..))))..... ( -45.80)
>DroEre_CAF1 529 111 + 1
UACCAAGCAUCGGUGGUUCAGUGGUAGAAUGCUCGCCUGCCACGCGGGCGGCCCGGGUUCGAUUCCCGGCCGAUGCAGAAAACUUUUUUCUGCCAACCAAUCU-------UAAAACUU--
.(((.......)))((((...(((((((((((((((((((...))))))((((.(((.......))))))))).)))..........))))))))...)))).-------........-- ( -38.90)
>DroYak_CAF1 572 99 + 1
CACCAAGCAUCGGUGGUUCAGUGGUAGAAUGCUCGCCUGCCACGCGGGCGGCCCGGGUUCGAUUCCCGGCCGAUGCAUAUCACUUUUUUUU-------------------UAACUAUC--
((((.......))))....(((((((...(((((((((((...))))))((((.(((.......))))))))).)))))))))).......-------------------........-- ( -37.10)
>consensus
CACCAAGCAUCGGUGGUUCAGUGGUAGAAUGCUCGCCUGCCACGCGGGCGGCCCGGGUUCGAUUCCCGGCCGAUGCAUACCAACUUUUUUUGUCAAACUAUCU_G__U__UAAAACUAAA
......(((((((..((((.......))))((.(((((((...)))))))))(((((.......))))))))))))............................................ (-35.90 = -35.90 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:29:14 2006