Locus 4785

Sequence ID 2R_DroMel_CAF1
Location 15,737,165 – 15,737,258
Length 93
Max. P 0.733853
window7687

overview

Window 7

Location 15,737,165 – 15,737,258
Length 93
Sequences 4
Columns 93
Reading direction reverse
Mean pairwise identity 96.06
Mean single sequence MFE -10.15
Consensus MFE -9.39
Energy contribution -9.45
Covariance contribution 0.06
Combinations/Pair 1.09
Mean z-score -1.69
Structure conservation index 0.92
SVM decision value 0.43
SVM RNA-class probability 0.733853
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 15737165 93 - 20766785
CACAAACACUCUACUAAACACUUUGCCAUCGUCAUGGCUCUUUAAUAAACUAUUUCUAUUAUCUAAUAAAGCAAAUGAAAGACAAUUUGCAUU
........................(((((....)))))................................((((((........))))))... ( -11.70)
>DroSec_CAF1 613186 93 - 1
CACAAACACUCCACUAAACACUUUGCCAUCGUCAUGGCUCUUUAAUAAACUAUUUCUAUUAUCUAAUAAAGCAAAUGAAAGACAAUUUGCAUU
........................(((((....)))))................................((((((........))))))... ( -11.70)
>DroSim_CAF1 520634 93 - 1
CACAAACACUCCACUAAACACUUUGGCAUCGUCAUGGCUCUUUAAUAAACUAUUUCUAUUAUCUAAUAAAGCAAAUGAAAGACAAUUUGCAUU
....................((.((((...)))).)).................................((((((........))))))... (  -7.80)
>DroYak_CAF1 536342 93 - 1
CACAAACACUCUGCUAAACACUUUGCUAUCAUCAUGGCUCUUUAAUAAACUAUUUCUACUAUCUAAUAAAGCAAAUGAAAUACAAUUUGCAUU
........................(((((....)))))................................((((((........))))))... (  -9.40)
>consensus
CACAAACACUCCACUAAACACUUUGCCAUCGUCAUGGCUCUUUAAUAAACUAUUUCUAUUAUCUAAUAAAGCAAAUGAAAGACAAUUUGCAUU
........................(((((....)))))................................((((((........))))))... ( -9.39 =  -9.45 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:29:08 2006