| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 15,721,774 – 15,721,871 |
| Length | 97 |
| Max. P | 0.665708 |
| Location | 15,721,774 – 15,721,871 |
|---|---|
| Length | 97 |
| Sequences | 6 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 81.01 |
| Mean single sequence MFE | -27.04 |
| Consensus MFE | -14.71 |
| Energy contribution | -14.87 |
| Covariance contribution | 0.17 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.26 |
| Structure conservation index | 0.54 |
| SVM decision value | 0.28 |
| SVM RNA-class probability | 0.665708 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 15721774 97 - 20766785 ---GUUUCUACGUUGC----C-A-UGCUGAUAUCACCCGCAGCGUAAAUCUUCUGGCUUAAUCCAAUUUAACACUUUAUGCUGCACUGCGCUUUGGCCAUGUU---GCU---------- ---((....((((.((----(-(-.((((....))...((((((((((.....(((......))).........)))))))))).....))..)))).)))).---)).---------- ( -23.24) >DroPse_CAF1 564153 101 - 1 ---GUGCCUCAGCAGCUCCUC-C-UGUUGAUAUCACCCGCAGCGUAAAUCUUCUGGAUUAAUCCAAUUUAACACUUUAUGCUGCACUGCGCUUUGGCCAUGCU---GCA---------- ---((((.(((((((......-)-))))))........((((((((((.....((((....)))).........))))))))))...))))....((......---)).---------- ( -27.64) >DroGri_CAF1 644449 106 - 1 --CGUUGCCAUGUUAG----CCU-UGUUAAUAUCACCCGCAGCGUAAAUCUUCUGGAUUAAUCCAAUUUAACACUUUAUGCUGCACUGCGCUUUGCUCAUGUUUGAGCAG------GCU --....((((((((((----(..-.)))))))).....((((((((((.....((((....)))).........)))))))))).........((((((....)))))))------)). ( -31.04) >DroWil_CAF1 962341 100 - 1 UUGGUUGCCAUGUUAC----C-A-UGUUGAUAUCACCCGCAGCGUAAAUCUUGUGGAUUAAUCCAAUUUAACACUUUAUGCUGCACUGCGCUUUGGCUCUGGU---GCA---------- ...(((..((((....----)-)-))..))).......((((((((((.....((((....)))).........))))))))))...(((((........)))---)).---------- ( -26.14) >DroAna_CAF1 487271 108 - 1 ---UUUGCAACGUUAC----C-AACGUUGAUAUCACCCGCAGCGUAAAUCUUCUGGAUUAAUCCAAUUUAACACUUUAUGCUGCACUGCGCUUUGGACAUGUU---GCCGCUUUUGGUU ---...(((((((..(----(-(((((((....))...((((((((((.....((((....)))).........))))))))))...)))..))))..)))))---))........... ( -26.54) >DroPer_CAF1 523242 101 - 1 ---GUGCCUCAGCAGCUCCUC-C-UGUUGAUAUCACCCGCAGCGUAAAUCUUCUGGAUUAAUCCAAUUUAACACUUUAUGCUGCACUGCGCUUUGGCCAUGCU---GCA---------- ---((((.(((((((......-)-))))))........((((((((((.....((((....)))).........))))))))))...))))....((......---)).---------- ( -27.64) >consensus ___GUUGCUAAGUUAC____C_A_UGUUGAUAUCACCCGCAGCGUAAAUCUUCUGGAUUAAUCCAAUUUAACACUUUAUGCUGCACUGCGCUUUGGCCAUGUU___GCA__________ ......................................((((((((((.....((((....)))).........))))))))))................................... (-14.71 = -14.87 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:29:03 2006