Locus 4778

Sequence ID 2R_DroMel_CAF1
Location 15,713,584 – 15,713,679
Length 95
Max. P 0.823391
window7680

overview

Window 0

Location 15,713,584 – 15,713,679
Length 95
Sequences 5
Columns 104
Reading direction forward
Mean pairwise identity 91.16
Mean single sequence MFE -26.76
Consensus MFE -23.90
Energy contribution -23.98
Covariance contribution 0.08
Combinations/Pair 1.08
Mean z-score -1.38
Structure conservation index 0.89
SVM decision value 0.69
SVM RNA-class probability 0.823391
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 15713584 95 + 20766785
GGAGGGCAAAAGUGUAUCCAGUG---------UAUUCAGUAUCCGGAUGCAGAAUCCUGCCGGGUGCAAUAAAAGUCCUGCGAAAGUUUUGUUUGCUAAAUAUA
..(((((.....(((((((.(((---------.((((.((((....)))).)))).).)).)))))))......)))))(((((.......)))))........ ( -23.80)
>DroSec_CAF1 590114 93 + 1
GGAGGGCAAAAGUGUAUCCAGUG---------UAUCCAGUAUCCGGAUGCAGAAUCCUGCCGGGUGCAAUAAAAGUCCUGCGAAAGUUUUGUUUGCUAAA--UA
..(((((.....(((((((....---------.((((.......))))((((....)))).)))))))......)))))(((((.......)))))....--.. ( -26.20)
>DroSim_CAF1 496326 93 + 1
GAAGGGCAAAAGUGUAUCCAGUG---------UAUCCAGUAUCCGGAUGCAGAAUCCUGCCGGGUGCAAUAAAAGUCCUGCGAAAGUUUUGUUUGCUAAA--UA
..(((((.....(((((((....---------.((((.......))))((((....)))).)))))))......)))))(((((.......)))))....--.. ( -26.10)
>DroEre_CAF1 494062 102 + 1
GGAGGGCAAAAGUAUAACCAGUGUAUCCAGUCUGUCCAGUAUCCGGAUGCAGAAUCCUGCCGGGUGCAAUAAAAGUCCUGCGAAAGUUUUGUUUGCUAAA--UA
((((((((.(.(((((.....)))))....).))))).(((((((...((((....)))))))))))........))).(((((.......)))))....--.. ( -25.50)
>DroYak_CAF1 512069 100 + 1
GGAGGGCAAAAAUGUAUCCAGUGGAU--AGUGGAUCCAGUAUCCGGAUGCAGAAUCCUGCCGGGUGCAAUAAAAGUCCUGCGAAAGUUUUGUUUGCUAAA--UA
..(((((.....(((((((.((((((--(.((....)).)))))((((.....)))).)).)))))))......)))))(((((.......)))))....--.. ( -32.20)
>consensus
GGAGGGCAAAAGUGUAUCCAGUG_________UAUCCAGUAUCCGGAUGCAGAAUCCUGCCGGGUGCAAUAAAAGUCCUGCGAAAGUUUUGUUUGCUAAA__UA
..(((((.....(((((((..............((((.......))))((((....)))).)))))))......)))))(((((.......)))))........ (-23.90 = -23.98 +   0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:29:02 2006