| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 15,709,952 – 15,710,053 |
| Length | 101 |
| Max. P | 0.701503 |
| Location | 15,709,952 – 15,710,053 |
|---|---|
| Length | 101 |
| Sequences | 6 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 82.89 |
| Mean single sequence MFE | -19.45 |
| Consensus MFE | -14.99 |
| Energy contribution | -15.52 |
| Covariance contribution | 0.53 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.77 |
| Structure conservation index | 0.77 |
| SVM decision value | 0.35 |
| SVM RNA-class probability | 0.701503 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 15709952 101 + 20766785 UCAGUCCGUUACCGCCUGACAGUCUGCUGUUGCAUAUUAAUGACUUUCUUUAAUGUCUUUUCCUCAUUUAUUUUACACACGGACACAAUUCACGCAGUC--GU------------ ...((((((....((..(((((....)))))))(((((((.(.....).)))))))......................))))))...............--..------------ ( -18.00) >DroVir_CAF1 706497 101 + 1 AGUGUCCGUUACCGCCUGACAGUCUGCUGUUGCAUAUUAAUGACUUUCUUUAAUGUCUUUUCCUCAUUUAUUUUACACACGGACACUUUUUCAACACCU--GC------------ (((((((((....((..(((((....)))))))(((((((.(.....).)))))))......................)))))))))............--..------------ ( -22.10) >DroGri_CAF1 628875 101 + 1 AGUGUCCGUUACCGCCUGACAGUCUGCUGCUGCAUAUUAAUGACUUUCUUUAAUGCCUUUUCCUCAUUUAUUUUACACACGGACACUUUUUCAACACUC--GC------------ (((((((((....((..(.(((....)))).)).((((((.(.....).)))))).......................)))))))))............--..------------ ( -19.20) >DroWil_CAF1 936758 105 + 1 UCCGUCCGUUACCGCGUAACAGUCUGCUGCUGCAUAUUAAUGACUUUCUUUAAUGUCUUUUACUCAUUUAUUUUAAACACGGGC--------CACAGCC--ACGCCGAAAAAAAA ...((((((......(((.(((....))).)))(((((((.(.....).)))))))......................))))))--------.......--.............. ( -15.40) >DroMoj_CAF1 782457 99 + 1 UGUGUCCGUUACCGCCUGACAGUCUGCUGCUGCAUAUUAAUGACUUUCUUUAAUGCCUUUUCCUCAUUUAUUUUACACACGGACACUU-UUCAGCGCCC--G------------- .((((((((....((..(.(((....)))).)).((((((.(.....).)))))).......................))))))))..-..........--.------------- ( -18.70) >DroAna_CAF1 475425 103 + 1 UGUGUCCGUUACCGCCUGACAGUCUGCUGUUGCAUAUUAAUGACUUUCUUUAAUGUCUUUUCCUCAUUUAUUUUACACACGGACACAUUUCACACAGUUCGUG------------ (((((((((....((..(((((....)))))))(((((((.(.....).)))))))......................))))))))).....(((.....)))------------ ( -23.30) >consensus UGUGUCCGUUACCGCCUGACAGUCUGCUGCUGCAUAUUAAUGACUUUCUUUAAUGUCUUUUCCUCAUUUAUUUUACACACGGACACUUUUUCAACACCC__GC____________ .((((((((....((....(((....)))..)).((((((.(.....).)))))).......................))))))))............................. (-14.99 = -15.52 + 0.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:29:01 2006