| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 15,707,748 – 15,707,838 |
| Length | 90 |
| Max. P | 0.500000 |
| Location | 15,707,748 – 15,707,838 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 101 |
| Reading direction | forward |
| Mean pairwise identity | 83.23 |
| Mean single sequence MFE | -34.63 |
| Consensus MFE | -23.30 |
| Energy contribution | -24.83 |
| Covariance contribution | 1.53 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.70 |
| Structure conservation index | 0.67 |
| SVM decision value | -0.07 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 15707748 90 + 20766785 --GAGUUGGUUUGGGUGGUAU------AUGUGC---CAGGGGCUCCGACAAAUGGGAAUCGCAGUCAACUGCCCACCUUUGACACGUGUGACCCCCAAGCU --.....((((((((.(((((------(((((.---((((((.(((........)))...((((....))))...)))))).))))))).))))))))))) ( -38.10) >DroSec_CAF1 584230 94 + 1 GGGAGUAGGUUUGGGUGGUAU------AUGUGCCACCAGGGGCUCCGACAAAUGGGAAUCGCAGUGAACUGCCCACCUUUGACACGUGUGACC-CCAAGCA ........(((((((.(.(((------(((((.((..((((..(((........)))..)((((....))))...))).)).)))))))).))-)))))). ( -34.60) >DroSim_CAF1 490520 95 + 1 AGGAGUAGGUUUGGGUGGUAU------AUGUGCCACCAGGGGCUCCGACAAAUGGGAAUCGCAGUCAACUGCCCACCUUUGACACGUGUGACCCCCAAGCA ........(((((((.(((((------(((((.((..((((..(((........)))..)((((....))))...))).)).))))))).)))))))))). ( -36.20) >DroEre_CAF1 488510 98 + 1 AGGAGUGGGUUUGGGUGGUAUACUCGUAUGUGG---CGCGGGUUCCGACAAAUGGGAAUCGCAGUCAACUGCCCACCUUUGACACGUGUGACCCCCGAGCU .......((((((((.((((((((((...((((---....((((((........))))))((((....))))))))...)))...)))).))))))))))) ( -35.50) >DroYak_CAF1 506099 92 + 1 AGGAGUAGGCUUGGGUGGUAU------AUGUGG---CAUGCGCUCCGACAAAUGGGAAUCGCAGUCAACUGCCCACCUUUGACACGUGUGACCCCCAAGCU .......((((((((.(((((------((((((---(....)).....((((.((.....((((....))))...)))))).))))))).))))))))))) ( -35.50) >DroAna_CAF1 473554 87 + 1 GGGAGUCGGGCAGGGGGGU-----------UGU---CAGAGGGUCUAACAAAUAGGAUACCCAGUCAACUGCCCACCUCUGACACGUGUGACCCACAAGCC ........(((..(.((((-----------(((---((((((((((........))))...(((....)))....)))))))))......)))).)..))) ( -27.90) >consensus AGGAGUAGGUUUGGGUGGUAU______AUGUGC___CAGGGGCUCCGACAAAUGGGAAUCGCAGUCAACUGCCCACCUUUGACACGUGUGACCCCCAAGCU ........(((((((.(((........(((((....((((((.(((........)))...((((....))))...)))))).)))))...)))))))))). (-23.30 = -24.83 + 1.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:29:00 2006