| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 15,686,338 – 15,686,430 |
| Length | 92 |
| Max. P | 0.755613 |
| Location | 15,686,338 – 15,686,430 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 106 |
| Reading direction | forward |
| Mean pairwise identity | 81.51 |
| Mean single sequence MFE | -25.37 |
| Consensus MFE | -20.12 |
| Energy contribution | -19.60 |
| Covariance contribution | -0.53 |
| Combinations/Pair | 1.22 |
| Mean z-score | -1.61 |
| Structure conservation index | 0.79 |
| SVM decision value | 0.49 |
| SVM RNA-class probability | 0.755613 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 15686338 92 + 20766785 U--UUCGUGUUCUAAAUUGGUGCUAAAUGCGCUGGCGUUUCAAUUUUCAGCAAUUGAGAUAAAUCGGAAGUU------GGCCGGCAUGGCAUCGCGAUGC------ .--.(((((..(((.......((.....))(((((((((((((((......)))))))))....(....)..------.)))))).)))...)))))...------ ( -26.90) >DroVir_CAF1 671982 96 + 1 -UGUUCGUGUUCCAAAUUGGUGCUAAAUGCGCUGGCGUUUCAAUUUUCAUCAAUUGAGAUAAAUCGGAAGUU-------GCCAGCAUGCCUUU--GAUAUCAUAUA -.....(((...((((..(((((.....))(((((((((((((((......)))))))))....(....)..-------))))))..))))))--)....)))... ( -25.30) >DroGri_CAF1 597835 95 + 1 U--UUCGUGUUCCAAAUUGGUGCUAAAUGCGCUGGCGUUUCAAUUUUCAACAAUUGAGAUAAAUCGGAAGUU-------GCCAGCAUGCCUUU--GAUGCCAUCCA .--..............((((..((((.(((((((((((((((((......)))))))))....(....)..-------))))))..)).)))--)..)))).... ( -27.00) >DroMoj_CAF1 748777 97 + 1 UUGUGCGUGUUCCAAAUUGCUGCUAAAUGCGCUGGCGUUUUGAUUCUCAACAAUUGAGAUAAAUCGGAAGUU-------ACCAGCAAGCCUUU--GAUGCCAUAUA .((((.((((..((((..(((((.....))(((((..((((((((((((.....)))))...)))))))...-------.))))).))).)))--))))))))).. ( -24.70) >DroAna_CAF1 452567 96 + 1 U--UUCGUGUUCCAAAUUGGUGCUAAAUGCGCUGGCGUUUCAAUUUCCAGCAAUUGAGAUAAAUCGGAAGUUUGCCUUUGCCAGCAUGCCUUU--GAUGC------ .--.....((..((((..(((((.....))(((((((((((((((......)))))))))....(....).........))))))..))))))--)..))------ ( -24.80) >DroPer_CAF1 489120 87 + 1 U--UUCGUGUUCCAAAUUGGUGCUAAAUGCGCUGGCGUUUCAAUUUCCAACAAUUGAGAUAAAUCGGAAGUUUG--GCAGCCAGCA---------GAAAU------ (--(((..((.((.....)).)).......(((((((((((((((......)))))))))....(....)....--...)))))).---------)))).------ ( -23.50) >consensus U__UUCGUGUUCCAAAUUGGUGCUAAAUGCGCUGGCGUUUCAAUUUUCAACAAUUGAGAUAAAUCGGAAGUU_______GCCAGCAUGCCUUU__GAUGC______ ......(((((..........((.....))(((((((((((((((......)))))))))....(....).........))))))..........)))))...... (-20.12 = -19.60 + -0.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:28:51 2006