Locus 4768

Sequence ID 2R_DroMel_CAF1
Location 15,681,477 – 15,681,570
Length 93
Max. P 0.886834
window7668

overview

Window 8

Location 15,681,477 – 15,681,570
Length 93
Sequences 6
Columns 93
Reading direction forward
Mean pairwise identity 91.26
Mean single sequence MFE -27.72
Consensus MFE -23.88
Energy contribution -23.38
Covariance contribution -0.50
Combinations/Pair 1.23
Mean z-score -1.98
Structure conservation index 0.86
SVM decision value 0.94
SVM RNA-class probability 0.886834
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 15681477 93 + 20766785
CUUUGGCCUUGCACAGGCUUAACCGCCCGGGGACUUGUGGUCUAUUUGUUGCAUUAAUUCUAAAGCAGCUGUUUUCUCAAGUUCCUGACACGG
....(((((.....)))))...(((..((((((((((.((...((..(((((.(((....))).))))).))..)).))))))))))...))) ( -29.50)
>DroSec_CAF1 558630 92 + 1
CGUUGGCCUU-UACAGGCAUAAACGCUCGGGGACUUGUGGUCUAUUUGUUGCAUUAAUUCUAAAGCAGCUGUUUUCUCAAGUUCCUGCCACGG
((((.((((.-...))))...))))..((((((((((.((...((..(((((.(((....))).))))).))..)).))))))))))...... ( -28.90)
>DroSim_CAF1 462331 92 + 1
CUUUGGCCUU-CACAGGCUUAACCGCCCGGGGACUUGUGGUCUAUUUGUUGCAUUAAUUCUAAAGCAGCUGUUUUCUCAAGUUUCUGCCACGG
....(((((.-...)))))...(((..(((..(((((.((...((..(((((.(((....))).))))).))..)).)))))..)))...))) ( -26.90)
>DroEre_CAF1 461362 92 + 1
CUUUGGCCUG-CACAGGUUUAGCCGCCCGGGGACUUGUGGUCUAUUUGUUGCAUUAAUUCUAAAGCAGCUGUUUUCUCAAGUUGCUGCCACGG
((.((((.((-(((((((...(((((..(....)..)))))..))))).))))..........(((((((.........))))))))))).)) ( -29.60)
>DroYak_CAF1 479095 92 + 1
CGUUGGCCUG-CACCGGCUUAACCGCUUGGGGACUUGUGGUCUAUUUGUUGCAUUAAUUCUAAAGCAGCUGUUUUCUCAAGUUCCUGCCACGG
(((.(((...-...(((.....)))...(((((((((.((...((..(((((.(((....))).))))).))..)).))))))))))))))). ( -28.40)
>DroAna_CAF1 448109 92 + 1
CUUUGGCUUU-CACAAGUUUAACAGCUAAGGGAUUUGUGGUCUAUUUUUUGCAUUAAUUCUAAAGCAGCUGUUUUCUCAAGUUCCUGCCAAGG
(((((((...-....(((......))).(((((((((.((...((...((((.(((....))).))))..))..)).)))))))))))))))) ( -23.00)
>consensus
CUUUGGCCUU_CACAGGCUUAACCGCCCGGGGACUUGUGGUCUAUUUGUUGCAUUAAUUCUAAAGCAGCUGUUUUCUCAAGUUCCUGCCACGG
...((((........(((......))).(((((((((.((.......(((((.(((....))).))))).....)).)))))))))))))... (-23.88 = -23.38 +  -0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:28:50 2006