Locus 4767

Sequence ID 2R_DroMel_CAF1
Location 15,681,032 – 15,681,123
Length 91
Max. P 0.550479
window7667

overview

Window 7

Location 15,681,032 – 15,681,123
Length 91
Sequences 6
Columns 104
Reading direction reverse
Mean pairwise identity 76.27
Mean single sequence MFE -29.21
Consensus MFE -16.52
Energy contribution -16.60
Covariance contribution 0.08
Combinations/Pair 1.14
Mean z-score -1.52
Structure conservation index 0.57
SVM decision value 0.03
SVM RNA-class probability 0.550479
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 15681032 91 - 20766785
CC-----AAGGAGCAGCAUCACCAUC--------AGGCCGGCACAAAGAGCAGCGUGCAAUUUGUGUUGCCUUUGUAAUGCAAAUUCAAGUGGGAGUCAAGCCG
((-----(..(((..((((.((....--------((((.((((((((..((.....))..))))))))))))..)).))))...)))...)))........... ( -25.70)
>DroVir_CAF1 664925 99 - 1
UU-----GAGGAGCUGCAGCUGCCUCCUGCAAGCCGAGCAGCACAAAGAGCAGCGCGCAAUUUGUGUUGCCUUUGUAAUGCAAAUUCAAGUGGGAGUCAAGUCG
((-----(((.(((....))).)((((..(.......(((..((((((.((((((((.....))))))))))))))..)))........)..)))))))).... ( -35.06)
>DroWil_CAF1 873583 84 - 1
AU-----AGGGACCUGCAA---------------GAGUCUGUACAAAGAGCAGCGCGCAAUUUGUGUUGCCUUUGUGAUGCAAAUUCAAGUGGGAGUCAAGUCG
..-----.((..((..(..---------------((((.(((((((((.((((((((.....))))))))))))))...))).))))..)..))..))...... ( -27.70)
>DroMoj_CAF1 741081 89 - 1
UG-----GAGGAGCUGC----------UGCCAGCCGAGCUGCACAAAGAGCAGCGCGCAAUUUGUGUUGCUUUUGUAAUGCAAAUUCAAGUGGGAGUCAAGACG
..-----........((----------(.(((((...(((((.......)))))..))((((((((((((....))))))))))))....))).)))....... ( -27.60)
>DroAna_CAF1 447709 83 - 1
GC-----AAGGAGCUGCAUCCC----------------AGGCACAAAGAGCAGCGCGCAAUUUGUGUUGCCUUUGUAAUGCAAAUUCAAGUGGGAGUCAGGUCG
..-----...((.(((..((((----------------(.((((((((.((((((((.....))))))))))))))...)).........)))))..))).)). ( -29.50)
>DroPer_CAF1 483901 94 - 1
GCGAGCGAAGGAGCUGCAGCCUCCUC--------C--ACAGUACAAAGAGCAGCGCGCAAUUUGUGCGGCCUUUGUAAUGCAAAUUCAAGUGGGAGUCGAGUCG
.(((.(((((((((....).)))))(--------(--((..(((((((.((..(((((.....)))))))))))))).((......)).))))...)))..))) ( -29.70)
>consensus
GC_____AAGGAGCUGCAGC______________CG_GCAGCACAAAGAGCAGCGCGCAAUUUGUGUUGCCUUUGUAAUGCAAAUUCAAGUGGGAGUCAAGUCG
.........(((..((((........................((((((.((((((((.....))))))))))))))..))))..)))................. (-16.52 = -16.60 +   0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:28:49 2006