Locus 4765

Sequence ID 2R_DroMel_CAF1
Location 15,678,386 – 15,678,478
Length 92
Max. P 0.998752
window7665

overview

Window 5

Location 15,678,386 – 15,678,478
Length 92
Sequences 5
Columns 99
Reading direction forward
Mean pairwise identity 79.74
Mean single sequence MFE -35.68
Consensus MFE -27.16
Energy contribution -27.18
Covariance contribution 0.02
Combinations/Pair 1.12
Mean z-score -3.24
Structure conservation index 0.76
SVM decision value 3.21
SVM RNA-class probability 0.998752
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 15678386 92 + 20766785
ACGCCUCGUCCGUUGUCCGUUGUCCGU-------UGCCCGCUGUCCGUUUCUGUUUUUCAUGGCUUGAGACGUGGAACUCGAAGCUUGGACAGCGGGCA
......((..((........))..)).-------(((((((((((((((((.(..(((((((........)))))))..))))))..)))))))))))) ( -37.50)
>DroSec_CAF1 555536 71 + 1
ACGCCUCGUCCGUUGUC----------------------------CGUUUCUGUUUUUCAUGGCUUGAGACGUGGAACUCGAAGCUUGGACAGCGGGCA
.......((((((((((----------------------------((((((.(..(((((((........)))))))..))))))..))))))))))). ( -31.60)
>DroSim_CAF1 456144 71 + 1
ACGCCUCGUCCGUUGUC----------------------------CGUUUCUGUUUUUCAUGGCUUGAGACGUGGAACUCGAAGCUUGGACAGCGGGCA
.......((((((((((----------------------------((((((.(..(((((((........)))))))..))))))..))))))))))). ( -31.60)
>DroEre_CAF1 458230 85 + 1
ACGGCUCGUCCGCUGUCCGUUGUCCGU--------------UGUCCGUUUCUGUUUUUCAUGGCUUGAGACGUGGAGCUCGAAGCUUGGACAGCGGGCA
(((((......)))))....(((((((--------------((((((((((.(..(((((((........)))))))..))))))..)))))))))))) ( -35.80)
>DroYak_CAF1 475906 99 + 1
AUGGCUCGUCCGUUGUCCGUUGUCCGUUCCCAGUUGUCCGCUGUCCGUUUCGGUUUUUCAUGGCUUGAGACGUGAAAGUCGAAGCUUGGACAGCGGGCA
.(((..((..((........))..))...)))..((((((((((((((((((..(((.((((........)))))))..))))))..)))))))))))) ( -41.90)
>consensus
ACGCCUCGUCCGUUGUCCGUUGUCCGU______________UGUCCGUUUCUGUUUUUCAUGGCUUGAGACGUGGAACUCGAAGCUUGGACAGCGGGCA
.......((((((((((((.....).....................(((((.(..(((((((........)))))))..))))))..))))))))))). (-27.16 = -27.18 +   0.02)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:28:47 2006