Locus 4763

Sequence ID 2R_DroMel_CAF1
Location 15,672,530 – 15,672,621
Length 91
Max. P 0.907464
window7661 window7662

overview

Window 1

Location 15,672,530 – 15,672,621
Length 91
Sequences 4
Columns 91
Reading direction forward
Mean pairwise identity 99.45
Mean single sequence MFE -28.25
Consensus MFE -27.00
Energy contribution -27.00
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -3.28
Structure conservation index 0.96
SVM decision value 1.05
SVM RNA-class probability 0.907464
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 15672530 91 + 20766785
AGGAACAUGUGCAACUGCAGCGCAAGCAAACAACCAGCAACCAGCAAGUUGCAACUAGCAACAUGUUGCCCAUGCCGAUAACAACGGGCAG
.(((((((((((.......((....)).........(((((......))))).....)).))))))).))..((((..........)))). ( -28.00)
>DroSec_CAF1 549726 91 + 1
AGGAACAUGUGCAACUGCAGCGCAAGCAAACAACCAGCAACCAGCAAGUUGCAACUAGCAACAUGUUGGCCAUGCCGAUAACAACGGGCAG
.((......(((....)))((....))......)).((..((((((.(((((.....))))).)))))).....(((.......))))).. ( -29.00)
>DroSim_CAF1 450397 91 + 1
AGGAACAUGUGCAACUGCAGCGCAAGCAAACAACCAGCAACCAGCAAGUUGCAACUAGCAACAUGUUGCCCAUGCCGAUAACAACGGGCAG
.(((((((((((.......((....)).........(((((......))))).....)).))))))).))..((((..........)))). ( -28.00)
>DroYak_CAF1 469828 91 + 1
AGGAACAUGUGCAACUGCAGCGCAAGCAAACAACCAGCAACCAGCAAGUUGCAACUAGCAACAUGUUGCCCAUGCCGAUAACAACGGGCAG
.(((((((((((.......((....)).........(((((......))))).....)).))))))).))..((((..........)))). ( -28.00)
>consensus
AGGAACAUGUGCAACUGCAGCGCAAGCAAACAACCAGCAACCAGCAAGUUGCAACUAGCAACAUGUUGCCCAUGCCGAUAACAACGGGCAG
.(((((((((((.......((....)).........(((((......))))).....)).)))))))..)).((((..........)))). (-27.00 = -27.00 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 2

Location 15,672,530 – 15,672,621
Length 91
Sequences 4
Columns 91
Reading direction reverse
Mean pairwise identity 99.45
Mean single sequence MFE -31.07
Consensus MFE -30.08
Energy contribution -30.32
Covariance contribution 0.25
Combinations/Pair 1.00
Mean z-score -2.13
Structure conservation index 0.97
SVM decision value 0.51
SVM RNA-class probability 0.763976
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 15672530 91 - 20766785
CUGCCCGUUGUUAUCGGCAUGGGCAACAUGUUGCUAGUUGCAACUUGCUGGUUGCUGGUUGUUUGCUUGCGCUGCAGUUGCACAUGUUCCU
..((((((.((.....))))))))(((((((.((.(((.((((((.((.....)).))))))..))).))((.......)))))))))... ( -32.00)
>DroSec_CAF1 549726 91 - 1
CUGCCCGUUGUUAUCGGCAUGGCCAACAUGUUGCUAGUUGCAACUUGCUGGUUGCUGGUUGUUUGCUUGCGCUGCAGUUGCACAUGUUCCU
((((.(((.((.(((((((..((((.((.(((((.....))))).)).))))))))))).....))..)))..)))).............. ( -28.30)
>DroSim_CAF1 450397 91 - 1
CUGCCCGUUGUUAUCGGCAUGGGCAACAUGUUGCUAGUUGCAACUUGCUGGUUGCUGGUUGUUUGCUUGCGCUGCAGUUGCACAUGUUCCU
..((((((.((.....))))))))(((((((.((.(((.((((((.((.....)).))))))..))).))((.......)))))))))... ( -32.00)
>DroYak_CAF1 469828 91 - 1
CUGCCCGUUGUUAUCGGCAUGGGCAACAUGUUGCUAGUUGCAACUUGCUGGUUGCUGGUUGUUUGCUUGCGCUGCAGUUGCACAUGUUCCU
..((((((.((.....))))))))(((((((.((.(((.((((((.((.....)).))))))..))).))((.......)))))))))... ( -32.00)
>consensus
CUGCCCGUUGUUAUCGGCAUGGGCAACAUGUUGCUAGUUGCAACUUGCUGGUUGCUGGUUGUUUGCUUGCGCUGCAGUUGCACAUGUUCCU
..((((((.((.....))))))))(((((((.((.(((.((((((.((.....)).))))))..))).))((.......)))))))))... (-30.08 = -30.32 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:28:45 2006