Locus 4761

Sequence ID 2R_DroMel_CAF1
Location 15,670,212 – 15,670,314
Length 102
Max. P 0.915258
window7659

overview

Window 9

Location 15,670,212 – 15,670,314
Length 102
Sequences 5
Columns 110
Reading direction reverse
Mean pairwise identity 78.96
Mean single sequence MFE -30.50
Consensus MFE -14.33
Energy contribution -16.65
Covariance contribution 2.32
Combinations/Pair 1.20
Mean z-score -2.34
Structure conservation index 0.47
SVM decision value 1.10
SVM RNA-class probability 0.915258
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 15670212 102 - 20766785
UCUACGGAGAUCAGACCCAAAGCCUUCG---GACUUCAGACUUCAGUCUUUAGUCUUGGGUCUCAAUUUCAGUCUCUCCACUCG-----AUUCUCGUUUGUGGCGAGUCU
......(((((.(((((((........(---((((..((((....))))..))))))))))))..)))))((.(((.((((.((-----.....))...)))).))).)) ( -35.10)
>DroSec_CAF1 547479 92 - 1
UCUACGGAGAUCAGACCUAAAGCCUUCC---GACUUCAGACUUCAGUCUUCAGUCUUGGGUCUCAAU----------CCACUCG-----AUUCUCGGUUGUGGCGAGUCU
.....(((....((((((((........---((((..((((....))))..))))))))))))...)----------))(((((-----...(......)...))))).. ( -25.60)
>DroSim_CAF1 448117 102 - 1
UCUACGGAGAUCAGACCCAAAGCCUUGG---GACUUCAGACUUCAGUCUUCAGUCUUGGGUCUCAAUUUCAGUCUCUCCACUCG-----AUUCUCGGUUGUGGCGAGUCU
......(((((.((((((((..(....)---((((..((((....))))..))))))))))))..)))))((.(((.(((((((-----.....)))..)))).))).)) ( -34.00)
>DroEre_CAF1 450326 104 - 1
UCUACGGCGAUCAGGCCCCAUGCCUCCCCAAGUCUUCAGACUUCGGUC-UCAGACUUGAGUCUCAAUUUCAGUCUCCCCACUCG-----AUUCUCGGUUGUGGCGAGUCU
.....(((....((((.....))))...(((((((..((((....)))-).))))))).)))........((.(((.(((((((-----.....)))..)))).))).)) ( -33.70)
>DroYak_CAF1 467550 98 - 1
UCUACGUAGAUCAGAGCC--------CCAAAGCCUUUAGAC---GACU-UCAGUCUUGGGUCUCAAUUUCAGUCGCUUCACUCGAUUCGAUUCUCGGUUGUGGCGAGUCU
.......((((..(((.(--------(((........((((---....-...)))))))).)))........(((((.((..(((........)))..)).))))))))) ( -24.10)
>consensus
UCUACGGAGAUCAGACCCAAAGCCUUCC___GACUUCAGACUUCAGUCUUCAGUCUUGGGUCUCAAUUUCAGUCUCUCCACUCG_____AUUCUCGGUUGUGGCGAGUCU
............((((((((...........((((..((((....))))..)))))))))))).......((.(((.((((..................)))).))).)) (-14.33 = -16.65 +   2.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:28:42 2006