| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 15,665,084 – 15,665,174 |
| Length | 90 |
| Max. P | 0.911846 |
| Location | 15,665,084 – 15,665,174 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 106 |
| Reading direction | reverse |
| Mean pairwise identity | 81.10 |
| Mean single sequence MFE | -30.88 |
| Consensus MFE | -18.53 |
| Energy contribution | -18.56 |
| Covariance contribution | 0.03 |
| Combinations/Pair | 1.05 |
| Mean z-score | -2.85 |
| Structure conservation index | 0.60 |
| SVM decision value | 1.08 |
| SVM RNA-class probability | 0.911846 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 15665084 90 - 20766785 AAAUGAGGAGCGCGCCUCAUUAAAGCGC--GCACGGUCUGCGGAGC------CAUUACCAAAAGACGUGCA-AGGCUCCCAAU-------GCAAUUGCAAAAAAAA ...((.(((((((((.........))))--(((((.(((..((...------.....))...)))))))).-..))))))).(-------((....)))....... ( -30.50) >DroVir_CAF1 645853 94 - 1 AAAUGAGGAGCGCGCCUCAUUAAAGCGC--GCACGGUCUGUGGGGC------UAUUACCAAAAGACGUGCA--GGCUCACAACGCGAAAUGCAAUUGCAGCAGA-- .......((((((((.........))))--(((((.(((...((..------.....))...)))))))).--.)))).....((....(((....)))))...-- ( -29.80) >DroPse_CAF1 508647 98 - 1 AAAUGAGGAGCGCGCCUCAUUAAAGACCAGCCAUGGUCUGCGGGGCUAUGGCUAUUACCAAAAGACGUGCA-AGGCUCACAAU-------GCAAUUGCAAAAAGGA .(((((((......))))))).....((((((((((((.....))))))))))..............((((-(.((.......-------))..)))))....)). ( -32.30) >DroGri_CAF1 570652 94 - 1 AAAUGAGGAGCGCGCCUCAUUAAAGCGC--ACACGGUCUUUGGGGC------UAUUACCAAAAGACGUGCA--AGCUCACAGCGCAAAACGCAAUUGCGGCAAA-- .(((((((......)))))))...((((--.....((((((.((..------.....)).))))))(((..--....))).))))....(((....))).....-- ( -30.80) >DroMoj_CAF1 719270 98 - 1 AAAUGAGGAGCGCGCCUCAUUAAAGCGC--GCACGGUCUGUGGGGC------UAUUACCAAAAGACGUGCAAAGGCUCACAACGCAAAACGCAAUUGCAACAACAA .......((((((((.........))))--(((((.(((...((..------.....))...))))))))....)))).....((((.......))))........ ( -29.60) >DroPer_CAF1 467760 98 - 1 AAAUGAGGAGCGCGCCUCAUUAAAGACCAGCCAUGGUCUGCGGGGCUAUGGCUAUUACCAAAAGACGUGCA-AGGCUCACAAU-------GCAAUUGCAAAAAGGA .(((((((......))))))).....((((((((((((.....))))))))))..............((((-(.((.......-------))..)))))....)). ( -32.30) >consensus AAAUGAGGAGCGCGCCUCAUUAAAGCGC__GCACGGUCUGCGGGGC______UAUUACCAAAAGACGUGCA_AGGCUCACAAC_______GCAAUUGCAAAAAA_A .(((((((......)))))))..............((((...((.............))...)))).((((...((..............))...))))....... (-18.53 = -18.56 + 0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:28:39 2006