Locus 4758

Sequence ID 2R_DroMel_CAF1
Location 15,661,151 – 15,661,271
Length 120
Max. P 0.587898
window7655

overview

Window 5

Location 15,661,151 – 15,661,271
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 80.44
Mean single sequence MFE -33.48
Consensus MFE -22.85
Energy contribution -21.93
Covariance contribution -0.91
Combinations/Pair 1.50
Mean z-score -1.33
Structure conservation index 0.68
SVM decision value 0.11
SVM RNA-class probability 0.587898
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 15661151 120 - 20766785
AUUUAGUCAAAUGCACUUCGCCACUGGUCUCCUCCGAUUCUGUAGCCGAAAUUACUUCGUUCACCUCCUCCUCGGUGGGAACACAGCCCAGGAGUCUCAGCACAGUGCCCACUUCUCUAA
..((((......(((((..((....((.(((((......((((....(((.....)))((((.((.((.....)).))))))))))...))))).))..))..)))))........)))) ( -28.24)
>DroVir_CAF1 640605 120 - 1
AUUUGGUCAAAUGCACCACGCCGCUUGUCUCCUCUGUUUCGGUGGCUGAUAUUACCUCAUUGACCUCCUCUUCGGUGGGUACACAGCCCAACAAUCUGAGAACUGUGCCCACCUCACGCA
....((((((.........((((((...(......)....))))))(((.......)))))))))........((((((((((...(.((......)).)...))))))))))....... ( -34.10)
>DroGri_CAF1 565336 120 - 1
AUUUGGUUAGAUGCACCACGCCGCUUGUCUCCUCCGUUUCGGUGGCCGAGAUGACCUCGUUGACCUCCUGCUCGGUGGGCACACAGCCCAACAGCCUCAAAACUGUGCCCACCUCACGCA
....((((((.........((((((...(......)....))))))((((.....))))))))))....((..((((((((((....................))))))))))....)). ( -35.35)
>DroWil_CAF1 843015 120 - 1
AUUUUGUGAGAUGAACUUCACCACUGGUUUCCUCUGAUUCUGUGGCCGAGAUGACCUCAUUCACUUCCUGCUCAGUGGGCACACAACCCAAGAGUCUCAAUACGGUUCCCACUUCUCGGA
......(((((.(((((..(((...)))...((((.....((((((((((.....)))...((((........))))))).)))).....)))).........))))).....))))).. ( -26.50)
>DroMoj_CAF1 712209 120 - 1
AUUUGGUCAAAUGCACCACGCCGCUCGUCUCCUCCGUUUCGGUUGCCGAGAUUACCUCGUUGACCUCCUGUUCGGUGGGCACGCAGCCCAACAAUCUCAGCACUGUGCCCACCUCUCGCA
....((((((..(((....((((..((.......))...)))))))((((.....))))))))))........((((((((((..((............))..))))))))))....... ( -37.70)
>DroAna_CAF1 428581 120 - 1
ACUUUGUCAAGUGGACUUCGCCACUGGUCUCCUCCGAUUCCGUGGCCGAAAUCACUUCAUUAACCUCCUGUUCGGUGGGAACGCAGCCCAGUAGUCUGAGGACAGUUCCCACUUCACGAA
......((((((((..((((((((.((..((....))..)))))).)))).))))))............((..(((((((((....(((((....))).))...)))))))))..)))). ( -39.00)
>consensus
AUUUGGUCAAAUGCACCACGCCACUGGUCUCCUCCGAUUCGGUGGCCGAGAUUACCUCAUUGACCUCCUGCUCGGUGGGCACACAGCCCAACAGUCUCAGAACUGUGCCCACCUCACGCA
.....(((((.........(((((.((............))))))).(((.....))).))))).........(((((((((......................)))))))))....... (-22.85 = -21.93 +  -0.91)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:28:38 2006