Locus 4756

Sequence ID 2R_DroMel_CAF1
Location 15,660,110 – 15,660,202
Length 92
Max. P 0.741830
window7652

overview

Window 2

Location 15,660,110 – 15,660,202
Length 92
Sequences 6
Columns 97
Reading direction reverse
Mean pairwise identity 82.70
Mean single sequence MFE -28.53
Consensus MFE -17.95
Energy contribution -19.48
Covariance contribution 1.53
Combinations/Pair 1.13
Mean z-score -2.58
Structure conservation index 0.63
SVM decision value 0.45
SVM RNA-class probability 0.741830
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 15660110 92 - 20766785
CCUGGCUUUGGAUCUCCACUUGGCCCUCUGCC-----UGGGCCCGGGCUACUGCCAUAAACACUAAAAGUGUUCGUCAUUUGCUGUUCCAGAUCCAA
..(((.((((((.(..((...(((((......-----.)))))(((((....)))...(((((.....))))))).....))..).)))))).))). ( -29.30)
>DroGri_CAF1 564071 87 - 1
GCUGGUUUAGG---UCUGCUAGGCCAGC--UU-----UUGGCCAUGGCUACUGCCAUAAACACUAAAAGUGUUCGUCAUUUGCUGUUCCAGAUCCAA
((((((((((.---....))))))))))--.(-----((((..(((((....))))).(((((.....)))))..............)))))..... ( -28.60)
>DroSec_CAF1 537299 92 - 1
CCUGGCUUUGGAUCUCCACUUGGCCCUCUGCC-----UGGGCGCGGGCUACUGCCAUAAACACUAAAAGUGUUCGUCAUUUGCUGUUCCAGAUCCAA
..(((.((((((.(..((..((((((......-----.))))((((((....)))...(((((.....))))))))))..))..).)))))).))). ( -30.30)
>DroEre_CAF1 440158 85 - 1
CCUGGCUCUGGAUCUCCACUUGGCCCUCUGCC------------GGGCUACUGCCAUAAACACUAAAAGUGUUCGUCAUUUGCUGUUCCAGAUCCAA
..(((.((((((.(..((..((((........------------.(((....)))...(((((.....))))).))))..))..).)))))).))). ( -27.20)
>DroYak_CAF1 456665 92 - 1
CCUGGCUCUGGAUCUGCACUUGGGCCUCUGCC-----UGGACCUGGACUACUGCCAUAAACACUAAAAGUGUUCGUCAUUUGCUGUUCCAGAUCCAA
..(((.((((((...(((...((((....)))-----).(((.(((.(....))))..(((((.....))))).)))...)))...)))))).))). ( -29.00)
>DroAna_CAF1 427683 96 - 1
-CCGGUUCGGGCCCUCAAUCUGGUCCUAUACCCUGGUCGGACCCUGGCUACUGCCAUAAACACUAAAAGUGUUCGUCAUUUGCUGUUCCAGAUCCAA
-..(((..(((((........)))))...)))((((.(((....((((....))))..(((((.....))))).........)))..))))...... ( -26.80)
>consensus
CCUGGCUCUGGAUCUCCACUUGGCCCUCUGCC_____UGGGCCCGGGCUACUGCCAUAAACACUAAAAGUGUUCGUCAUUUGCUGUUCCAGAUCCAA
..(((.((((((.........(((((............)))))..(((....)))(..(((((.....)))))..)..........)))))).))). (-17.95 = -19.48 +   1.53)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:28:35 2006