| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 15,646,237 – 15,646,327 |
| Length | 90 |
| Max. P | 0.561626 |
| Location | 15,646,237 – 15,646,327 |
|---|---|
| Length | 90 |
| Sequences | 5 |
| Columns | 101 |
| Reading direction | reverse |
| Mean pairwise identity | 90.89 |
| Mean single sequence MFE | -20.68 |
| Consensus MFE | -18.66 |
| Energy contribution | -19.10 |
| Covariance contribution | 0.44 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.18 |
| Structure conservation index | 0.90 |
| SVM decision value | 0.06 |
| SVM RNA-class probability | 0.561626 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 15646237 90 - 20766785 UCGCAAAUAGAGGAAAUGCCUCACUAAUUAGAGGCAAACGCUUGGAUAACCCACUUCCCAGAGUUGCAGCAUCCACUUGAAC---UUCUG--------UCU ......(((((((...((((((........))))))..((..(((((...(.((((....)))).)....)))))..))..)---)))))--------).. ( -21.70) >DroSec_CAF1 523575 90 - 1 UCGCAAAUGGAGGAAAUGCCUCACUAAUUAUGGGCAAACGCUUGGAUAACCCACUUCCCAAGGUUGCAGCAUCCACUUGAAC---UUCUG--------UCU ...(((.((((.....((((.((.......))))))(((.(((((............))))))))......)))).)))...---.....--------... ( -17.90) >DroSim_CAF1 420317 90 - 1 UCGCAAAUGGAGGAAAUGCCUCACUAAUUAGAGGCAAACGCUUGGAUAACCCACUUCCCAAGGUUGCAGCAUCCACUUGAAC---UUCUG--------UCU ...(((.((((.....((((((........))))))(((.(((((............))))))))......)))).)))...---.....--------... ( -22.50) >DroEre_CAF1 424802 90 - 1 UCGCAAAUGGAGGAAAUGCCUCACUAAUUAGAGGCAAACGCUUGGAUAACCCACUUCCCAGAGUUGCAGCAUCCACUUGAAC---UUCUA--------UCC ..((((..(((((...((((((........))))))......(((.....)))))))).....))))...............---.....--------... ( -21.80) >DroYak_CAF1 442222 101 - 1 UCGCAAAUGGAGGAAAUGCCUCACUAAUUAGAGGCAAACGCUUAGAUAACCCACUUCCCAGAGUUGCAGCAUCCACUUGAACAACAUCUAUCUGAAUAUCU ........(((((...((((((........))))))..(.....)........)))))((((((((...((......))..)))).....))))....... ( -19.50) >consensus UCGCAAAUGGAGGAAAUGCCUCACUAAUUAGAGGCAAACGCUUGGAUAACCCACUUCCCAGAGUUGCAGCAUCCACUUGAAC___UUCUG________UCU ..((((..(((((...((((((........))))))......(((.....)))))))).....)))).................................. (-18.66 = -19.10 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:28:33 2006