Locus 4751

Sequence ID 2R_DroMel_CAF1
Location 15,625,842 – 15,625,940
Length 98
Max. P 0.936262
window7645

overview

Window 5

Location 15,625,842 – 15,625,940
Length 98
Sequences 5
Columns 98
Reading direction reverse
Mean pairwise identity 89.05
Mean single sequence MFE -28.94
Consensus MFE -21.54
Energy contribution -22.26
Covariance contribution 0.72
Combinations/Pair 1.14
Mean z-score -2.48
Structure conservation index 0.74
SVM decision value 1.25
SVM RNA-class probability 0.936262
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 15625842 98 - 20766785
GGAAUAAUUCCGUGGGGUUAGGAUGGGUUAUCAGCUAUCACUGAUAGUUCGACUUGCCUCAAGUGGGAAUUAUUUCAAAAUUAACUGAGGGCAUUAAA
(((((((((((.((((((.(((.((..(((((((......)))))))..)).)))))))))....)))))))))))...................... ( -33.60)
>DroSec_CAF1 416429 97 - 1
GGAAUAAUUCCGAGGGGUUAGGAUGGGUUAUC-GCUAUCACUGAUUCUUCGACUUGCCUUAAGUGAGAAUUAUUUCAAAAUUAGCUGAGCGCAUUAAA
((((((((((((((((((((((((((......-.))))).)))))))))))(((((...)))))..)))))))))).......((.....))...... ( -29.50)
>DroSim_CAF1 399468 97 - 1
GGAAUAAUUCCGAGGGGUUAGGAUGGGUUAUC-GCUAUCACUGAUUCUUCGACUUGCCUUAAGUGGGAAUUAUUUCAAAAUUAGCUGAGGGCAUUAAA
((((((((((((((((((((((((((......-.))))).)))))))))).(((((...))))).))))))))))).......((.....))...... ( -32.10)
>DroEre_CAF1 404330 97 - 1
GGAAUAGUUCCGAGGGGUUAAGAUGGGUUAUC-GCUAUCACUGAUUCUUCGAUCUGCUCUAAGUGGUAAUUAUUUCAGAAUUAGUUGAGCGCAUGAGA
(((.(((...((((((((((.(((((......-.)))))..))))))))))..))).)))..(((.((((((.........))))))..)))...... ( -20.90)
>DroYak_CAF1 421235 98 - 1
GGAAUAAUUUCGAGGGGUUAAGCUGGGUUAUCAGCUAUCACUGAUUCUUCGAUCGGCUCUAAGUGGGAAUUAUUUCAAAAUUAGCUGAGGGCAUCAGA
((((((((((((((((((((((((((....)))))).....)))))))))))((.((.....)).)))))))))))........((((.....)))). ( -28.60)
>consensus
GGAAUAAUUCCGAGGGGUUAGGAUGGGUUAUC_GCUAUCACUGAUUCUUCGACUUGCCUUAAGUGGGAAUUAUUUCAAAAUUAGCUGAGGGCAUUAAA
((((((((((((((((((((((((((........))))).)))))))))))..(..(.....)..)))))))))))...................... (-21.54 = -22.26 +   0.72)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:28:29 2006