Locus 475

Sequence ID 2R_DroMel_CAF1
Location 2,677,548 – 2,677,656
Length 108
Max. P 0.919176
window900

overview

Window 0

Location 2,677,548 – 2,677,656
Length 108
Sequences 6
Columns 115
Reading direction reverse
Mean pairwise identity 75.02
Mean single sequence MFE -30.72
Consensus MFE -18.58
Energy contribution -22.20
Covariance contribution 3.62
Combinations/Pair 1.16
Mean z-score -1.80
Structure conservation index 0.61
SVM decision value 1.13
SVM RNA-class probability 0.919176
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 2677548 108 - 20766785
UUUGGGUGCCAUUCCCUGCACUCGAUUCUUGAGCCCGGCGACUAGCAACUGCCAACUUGCAACUUGCAAC-------GAGCGACUUGCAACGGCGACUCUUGACUCUCGAAUCCC
...((((((........))))))(((((..(((....((.....))...((((...((((((.((((...-------..)))).)))))).))))........)))..))))).. ( -32.90)
>DroSec_CAF1 110271 94 - 1
UUUGGGUGCCAUUCCCUGCACUCGAUUCUUGAGCCCGGCGACUAGCAACUGCCAACUUGCAAC---------------------UUGCAACGGCGACUCUUGACUCUCGAAUCCC
...((((((........))))))(((((..(((....((.....))...((((...((((...---------------------..)))).))))........)))..))))).. ( -25.80)
>DroSim_CAF1 108494 94 - 1
UUUGGGUGCCAUUCCCUGCACUCGAUUCUUGAGCCCGGCGACUAGCAACUGCCAACUUGCGAC---------------------UUGCAACGGCGACUCUUGACUCUCGAAUCCC
...((((((........))))))((.((..(((((((((((...((((........))))...---------------------))))..))).).)))..)).))......... ( -25.20)
>DroEre_CAF1 109484 108 - 1
UUUGGGUGCCAUUCGCUGCACUCGAUUCUUGAGCCAGGCGACUUGCAACUGCCAGCUUGC-------AACUAGCGACUUGCAACUCGCAAUGGCCACUCUCGACUCUCGAAUCUC
...((((((........))))))(((((.((.((((.((((.((((((.(((.((.....-------..)).)))..)))))).))))..)))))).....(.....)))))).. ( -33.20)
>DroYak_CAF1 106509 114 - 1
UUUGGGUGCCAUUCCCUGCACUCGAUUCUUGAGCCA-GCGACUUGCAACUGCCAACUUGCAACUUGCAACUAGAGACUUGCAGCUUGCAGCUUGCGAUGGCGACUCUUGAAUCUC
...((((((........))))))(((((..(((...-((.(.((((((((((.((.(((((((((.......)))..)))))).)))))).))))))).))..)))..))))).. ( -38.60)
>DroAna_CAF1 112258 85 - 1
CUUGGGUGCCAUUCCCUGCACCCGAUUCUCGAGUCUGGCUACUAGCAACUUGCAACUUGCGAC---------------------UUG------CGACUCUUGACUCCGG---CUC
.((((((((........))))))))..((.(((((.((......((((.((((.....)))).---------------------)))------)....)).))))).))---... ( -28.60)
>consensus
UUUGGGUGCCAUUCCCUGCACUCGAUUCUUGAGCCCGGCGACUAGCAACUGCCAACUUGCAAC_____________________UUGCAACGGCGACUCUUGACUCUCGAAUCCC
...((((((........))))))(((((..(((....((.....))....(((...((((((.((((((........)))))).)))))).))).........)))..))))).. (-18.58 = -22.20 +   3.62)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:29 2006