Locus 4749

Sequence ID 2R_DroMel_CAF1
Location 15,604,751 – 15,604,864
Length 113
Max. P 0.607838
window7642

overview

Window 2

Location 15,604,751 – 15,604,864
Length 113
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 92.06
Mean single sequence MFE -27.10
Consensus MFE -21.34
Energy contribution -21.74
Covariance contribution 0.40
Combinations/Pair 1.00
Mean z-score -1.51
Structure conservation index 0.79
SVM decision value 0.15
SVM RNA-class probability 0.607838
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 15604751 113 + 20766785
AGCUAAUACAGUUAUUAGCAAACAAGUUUAUUAUGUACCUGAAAGCAAAUUGAAUAACUGUUGACGUUUUUCGACCGAUUCAAAGUUGAACUG-------UGUGGCAGGUACUUGUUUUG
.(((((((....)))))))((((((((.........(((((...(((..((((((....(((((......)))))..))))))((.....)).-------)))..))))))))))))).. ( -27.80)
>DroSec_CAF1 395585 107 + 1
AGCUAAUACAGUUAUUAGCAAACAAGUUUAUUAUGUAGCUGAAAGCAAAUUGAAUAACUGUUGACGUUUUUCGACCGAUUCAA------ACUG-------UGUGGCAGGUACUUGUUUUG
.(((((((....)))))))((((((((.....((.(.((((...(((..((((((....(((((......)))))..))))))------..))-------).))))).)))))))))).. ( -25.10)
>DroSim_CAF1 377471 113 + 1
AGCUAAUACAGUUAUUAGCAAACAAGUUUAUUAUGUAGCUGAAAGCAAAUUGAAUAACUGUUGACGUUUUUCGACCGAUUCAAAGUUGAACUG-------UGUGGCAGGUACUUGUUUUG
.(((((((....)))))))((((((((......(((.((......(((.((((((....(((((......)))))..))))))..))).....-------.)).)))...)))))))).. ( -25.60)
>DroEre_CAF1 383024 113 + 1
AGCUAAUACAGUUAUUAGCAAACACGUUUAUUAUGUGGCUAACAGCAAAUUGAAUAACUGUUGACGUUUUUCGACCGAUUCAAAGUUUAGCUG-------UGUGGCAGGUACUUGUUUUC
.(((((((....)))))))...(((((.....)))))((((((((((((((((((....(((((......)))))..)))))..)))).))))-------).)))).............. ( -29.50)
>DroYak_CAF1 399564 120 + 1
AGCUAAUACAGUUAUUAGCAAACAAGUUUAUUAUGUGGCUAAAAGCAAAUUGAAUAACUGUUGACGUUUUUCGACCGAUUCAACGUUGAACUGUGUUGUGUGUGGCAGGUACUUGUUUUC
.(((((((....)))))))((((((((......(((.((.....((((........((..(..(((((..((....))...)))))..)...)).))))..)).)))...)))))))).. ( -27.50)
>consensus
AGCUAAUACAGUUAUUAGCAAACAAGUUUAUUAUGUAGCUGAAAGCAAAUUGAAUAACUGUUGACGUUUUUCGACCGAUUCAAAGUUGAACUG_______UGUGGCAGGUACUUGUUUUG
.(((((((....)))))))((((((((......(((.((.....))...((((((....(((((......)))))..)))))).....................)))...)))))))).. (-21.34 = -21.74 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:28:26 2006