Locus 4748

Sequence ID 2R_DroMel_CAF1
Location 15,599,845 – 15,599,940
Length 95
Max. P 0.596461
window7641

overview

Window 1

Location 15,599,845 – 15,599,940
Length 95
Sequences 6
Columns 105
Reading direction forward
Mean pairwise identity 75.82
Mean single sequence MFE -27.63
Consensus MFE -13.11
Energy contribution -13.00
Covariance contribution -0.11
Combinations/Pair 1.20
Mean z-score -1.86
Structure conservation index 0.47
SVM decision value 0.13
SVM RNA-class probability 0.596461
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 15599845 95 + 20766785
GAAACAGUUCACCGGCUUCCA-UUGGCAAAAGGCGAUG--GAUG---AUGAGUG-AACGGCC---GGGGGAAGCUGACAAAGCAAUUUGCAGGCGAGAAAGGUGA
...((..(((.((((((((((-(((.(....).)))))--))..---....(..-..)))))---)).....(((..((((....))))..)))..)))..)).. ( -32.20)
>DroPse_CAF1 441070 95 + 1
GAAACACUUGGCUGGCUUCGA-UGGGGCGAUGGCGAUGGGGA---------UGGCGAUGGCAAAGUGGUGGAGCUGACAACGCAAUUUGCAGGCGAGAAAGGUGA
....(((((..((.(((((((-....((.((.((.((....)---------).)).)).))...(((.((.......)).)))...))).)))).))..))))). ( -27.20)
>DroSec_CAF1 390753 98 + 1
GAAACACUUCACCGGCUUCCA-UUGGCAAAAGGCGAUG--GAUGAUGAUGAGUG-AACGGCC---GGGGGAAGCUGACAAAGCAUUUUGCAGGCGAGAAAGGUGA
....((((((.((((((((((-(((.(....).)))))--)).........(..-..)))))---))..)).(((.....))).(((((....)))))..)))). ( -30.00)
>DroEre_CAF1 378181 95 + 1
GAAACACUUCACCGGCUUCCA-UUGGCUAAAGGCGAUG--GAUG---AUGAGCG-AACGGCC---GGAGGAAGCUGACAAAGCAAUUUGCAGGCGAGAAAGGUGA
....(((((..((((((((((-(((.(....).)))))--))..---.......-...))))---)).....(((..((((....))))..))).....))))). ( -31.20)
>DroAna_CAF1 366442 80 + 1
GAAACACUUCACCGGCUUCAAGCUGGCUAAAGGCAAAA--AA-----------------------GAGAGAAGCUGACAAAGCAAUUUGCAGGCGAGAAAGGUGA
........(((((.((((..((....))..))))....--..-----------------------.......(((..((((....))))..)))......))))) ( -18.90)
>DroPer_CAF1 400046 101 + 1
GAAACACUUGGCUGGCUUCGA-UGGGGCGAGGGCGAUGGGGAUG---GUGAUGGCGAUGGCAAAGUGGUGGAGCUGACAACGCAAUUUGCAGGCGAGAAAGGUGA
....(((((..((.((((...-....((.(..((.((....)).---))..).))....(((((...(((..........)))..))))))))).))..))))). ( -26.30)
>consensus
GAAACACUUCACCGGCUUCCA_UUGGCAAAAGGCGAUG__GAUG___AUGAGGG_AACGGCC___GGGGGAAGCUGACAAAGCAAUUUGCAGGCGAGAAAGGUGA
....(((((..(((((((((.....((.....))..........................((...)).)))))))).....((.....))......)..))))). (-13.11 = -13.00 +  -0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:28:25 2006