Locus 4747

Sequence ID 2R_DroMel_CAF1
Location 15,595,144 – 15,595,237
Length 93
Max. P 0.606672
window7640

overview

Window 0

Location 15,595,144 – 15,595,237
Length 93
Sequences 6
Columns 108
Reading direction forward
Mean pairwise identity 77.36
Mean single sequence MFE -16.51
Consensus MFE -11.23
Energy contribution -11.57
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -1.14
Structure conservation index 0.68
SVM decision value 0.15
SVM RNA-class probability 0.606672
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 15595144 93 + 20766785
CACUCGUUGCG---ACUCCG-CUCGUGCAAAUGAUUAUCAAUCAUUUUGGGAUUAAAAUUCCUUGUGGUGUUUUGUCACACAUUUCG-UUGU------UUCUC----C
.....(..(((---((...(-(....))...((((.....(((((...((((.......)))).))))).....))))........)-))))------..)..----. ( -18.10)
>DroVir_CAF1 543740 87 + 1
CUU---CUA--------CGG---CUUGCAAAUGAUUAUCAAUCAUUUUGGGAUUAAAAUUCCUUGUGGUGUUUUGUCACUCAUUUG--UUGUUGUUGUUG-UC----G
...---..(--------(((---(..((((((((....(((.((((..((((.......))))...))))..)))....)))))))--).))))).....-..----. ( -19.80)
>DroPse_CAF1 435693 91 + 1
CU--CUCUCUC---UCUCUGCCUCGUGCAAAUGAUUAUCAAUCAUUUUGGGAUUAAAAUUCCUUGUGGUGUUUUGUCACACAUUUCC-CUAC------CUU-C----C
..--.......---..........(((....((((.....(((((...((((.......)))).))))).....)))))))......-....------...-.----. ( -12.70)
>DroYak_CAF1 389887 101 + 1
CACUCGUUGCGUUCACGCCG-CUCGUGCAAAUGAUUAUCAAUCAUUUUGGGAUUAAAAUUCCUUGUGGUGUUUUGUCACACAUUUCG-UUGUGUUUC-UCCUC----C
(((..((.(((....))).)-)..))).(((((((.....))))))).((((.((((((.((....)).))))))..(((((.....-.)))))...-)))).----. ( -21.30)
>DroAna_CAF1 361846 96 + 1
CU--CUUUUCA---ACUCCG-CUCGUGCAAAUGAUUAUCAAUCAUUUUGGGAUUAAAAUUCCUUGUGGUGUUUUGUCACACAUUUCCCUCGA------CUCUAGACAC
..--......(---((.(((-(......(((((((.....))))))).(((((....)))))..)))).))).((((...............------.....)))). ( -14.45)
>DroPer_CAF1 394596 91 + 1
CU--CUCUCUC---UCUCUGCCUCGUGCAAAUGAUUAUCAAUCAUUUUGGGAUUAAAAUUCCUUGUGGUGUUUUGUCACACAUUUCC-CUAC------CUU-C----C
..--.......---..........(((....((((.....(((((...((((.......)))).))))).....)))))))......-....------...-.----. ( -12.70)
>consensus
CU__CUCUCCC___ACUCCG_CUCGUGCAAAUGAUUAUCAAUCAUUUUGGGAUUAAAAUUCCUUGUGGUGUUUUGUCACACAUUUCC_UUGU______CUCUC____C
........................(((....((((.....(((((...((((.......)))).))))).....)))))))........................... (-11.23 = -11.57 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:28:24 2006