| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 15,579,267 – 15,579,366 |
| Length | 99 |
| Max. P | 0.539418 |
| Location | 15,579,267 – 15,579,366 |
|---|---|
| Length | 99 |
| Sequences | 6 |
| Columns | 102 |
| Reading direction | reverse |
| Mean pairwise identity | 89.87 |
| Mean single sequence MFE | -31.54 |
| Consensus MFE | -25.35 |
| Energy contribution | -25.91 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.18 |
| Mean z-score | -2.05 |
| Structure conservation index | 0.80 |
| SVM decision value | 0.01 |
| SVM RNA-class probability | 0.539418 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 15579267 99 - 20766785 GUCAAGGUGUUGCUGAGGGGCGUUGCAGCAGACAGUUAGAAAUGGAAAAGACAAGUCUAAUUCUGGCAUCAAUAAGCCGAAGCUGCAAUAUCCUUGCCG--- .....(((.......((((..(((((((((((..((((((..((.......))..)))))))))(((........)))...))))))))..))))))).--- ( -32.11) >DroSec_CAF1 372806 99 - 1 GUCAAGGUGUUGCUGAGGGGCGUUGCUGCAGACAGUUAGAAAUGGAAAAGACAGGUCUAAUUCUGGCAUCAAUAAGCCGAAGCUGCAAUAUCCUUGCCG--- (.(((((((((((.(...(((((((.((((((..((((((..((.......))..))))))))).))).))))..)))....).)))))).))))).).--- ( -32.50) >DroSim_CAF1 352703 99 - 1 GUCAAGGUGUUGCUGAGGGGCGUUGCAGCAGACAGUUAGAAAUGGAAAAGACAGGUCUAAUUCUGGCAUCAAUAAGCCGAAGCUGCAAUAUCCUUGCCG--- .....(((.......((((..(((((((((((..((((((..((.......))..)))))))))(((........)))...))))))))..))))))).--- ( -33.31) >DroEre_CAF1 360313 99 - 1 GUCAAGGUGUUGCAGCGGGGCGUUGCAGCAGACAGUUAGAAAUGGGAAAGACAAGUCUAGUUCCGGCAUCAAUAAGCCGAAGCUGCAAUAUCCUUGCCG--- (.((((((((((((((((((((((......)))...((((..((.......))..)))))))))(((........)))...))))))))).))))).).--- ( -37.80) >DroYak_CAF1 375800 99 - 1 GUCAAGGUGUUGCUGAGGGGCGUUGCAGCAGACAGUUAGAAAUGGUAAAGACAAGUCUAAUUCUGGCAUCAAUAAGCCGAAGCUGCAAUAUCCUUGCUG--- ...........((.(((((..(((((((((((..((((((..((.......))..)))))))))(((........)))...)))))))).)))))))..--- ( -31.70) >DroPer_CAF1 380313 94 - 1 GUCUAGGUGUUGCUGAGGGGCGUUGCUGCAGACAGUUAGAAAUGGGAGAG--GAGUCGAAUUCUG------AAAAGCCGAAGAACCAAUAUCCUUGCCUGCA ((((.(((..((((....))))..)))..))))..........(((..((--((......((((.------.........))))......))))..)))... ( -21.80) >consensus GUCAAGGUGUUGCUGAGGGGCGUUGCAGCAGACAGUUAGAAAUGGAAAAGACAAGUCUAAUUCUGGCAUCAAUAAGCCGAAGCUGCAAUAUCCUUGCCG___ .....(((.......((((..((((((((....(((((((..((.......))..))))))).((((........))))..))))))))..))))))).... (-25.35 = -25.91 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:28:18 2006