Locus 474

Sequence ID 2R_DroMel_CAF1
Location 2,674,633 – 2,674,740
Length 107
Max. P 0.691741
window899

overview

Window 9

Location 2,674,633 – 2,674,740
Length 107
Sequences 6
Columns 115
Reading direction forward
Mean pairwise identity 77.47
Mean single sequence MFE -28.03
Consensus MFE -7.83
Energy contribution -8.62
Covariance contribution 0.78
Combinations/Pair 1.38
Mean z-score -2.88
Structure conservation index 0.28
SVM decision value 0.33
SVM RNA-class probability 0.691741
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 2674633 107 + 20766785
GCCAAAGUCGGAUUCCGAUUCCGAUUCGGAUUCGGAUUCGGAUUCGGAUUCGUAUUCGCAUU----CGGACAUCU----GACCGACCAUUUGUAUAAUUGGCAUCUCUAAUUUUU
(((((.((((((((((((...(((..(((((((((((....)))))))))))...)))...)----)))).))))----)))(((....))).....)))))............. ( -37.30)
>DroPse_CAF1 121095 94 + 1
-CUAAACUCGAUGUCCGAUUCCGACUUGGAU------------UCGGACUCGGACUCGGACU----CGGACGUCUGUCUGA----CCAUUUGUAUAAUUGGCAUCUCUAAUUUUU
-......((((.((((((.(((((.......------------))))).))))))))))..(----(((((....))))))----(((..........))).............. ( -27.80)
>DroSec_CAF1 107548 85 + 1
GCCAAAGUCGGAUUCCGAUUCCGAUUCG------------------GAUUCGUAUUCGCAUU----CGGACGUCU----GA----CCAUUUGUAUAAUUGGCAUCUCUAAUUUUU
(((((.((((((((((((...(((..((------------------....))...)))...)----)))).))))----))----)(....).....)))))............. ( -23.90)
>DroSim_CAF1 105782 91 + 1
GCCAAAGUCGGAUUCCGAUUCCGAUUCGGAU------------UCGGAUUCGUAUUCGCAUU----CGGACGUCU----GA----CCAUUUGUAUAAUUGGCAUCUCUAAUUUUU
(((((.((((((((((((...(((..(((((------------....)))))...)))...)----)))).))))----))----)(....).....)))))............. ( -27.10)
>DroWil_CAF1 138280 99 + 1
GCGGGAUUGGGAUUUGGAUUUAGAUUCGGAU------------UCGGAUUCGGAUGCGGACUUGGUUGGACGUCUGUCUGA----CUAUUUAUAUAAUUGGCAUCUCUAAUUUUU
...(((((.((((((((((....))))))))------------)).)))))((((((.((..((((..(((....)))..)----))).........)).))))))......... ( -29.70)
>DroYak_CAF1 103746 85 + 1
GCCUAAGUCGGAUUCCGAUUCUGAUUCGU------------------AUUCGGAUUCGCAUU----CGGACGUCU----GA----CCAUUUGUAUAAUUGGCAUCUCUAAUUUUU
(((...((((((((((((..(.((((((.------------------...)))))).)...)----)))).))))----))----)(....).......)))............. ( -22.40)
>consensus
GCCAAAGUCGGAUUCCGAUUCCGAUUCGGAU____________UCGGAUUCGGAUUCGCAUU____CGGACGUCU____GA____CCAUUUGUAUAAUUGGCAUCUCUAAUUUUU
((((((((((((.......))))))).........................................((...((.....))....))..........)))))............. ( -7.83 =  -8.62 +   0.78)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:28 2006