| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 15,551,531 – 15,551,630 |
| Length | 99 |
| Max. P | 0.581832 |
| Location | 15,551,531 – 15,551,630 |
|---|---|
| Length | 99 |
| Sequences | 6 |
| Columns | 109 |
| Reading direction | forward |
| Mean pairwise identity | 84.85 |
| Mean single sequence MFE | -19.91 |
| Consensus MFE | -14.89 |
| Energy contribution | -15.75 |
| Covariance contribution | 0.86 |
| Combinations/Pair | 1.05 |
| Mean z-score | -2.05 |
| Structure conservation index | 0.75 |
| SVM decision value | 0.10 |
| SVM RNA-class probability | 0.581832 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 15551531 99 + 20766785 CUUUUCACUCGCCGCGGUAAUGAAGCAAUUAAUUAUCACAUCUCCACCCCGCCAC---------ACUAAGCCAUACCACCAAA-AACCCGGCGGAAUUCCUUAGAAGAG ((((((....((((.((((((.((....)).)))))).............((...---------.....))............-....))))((....))...)))))) ( -17.40) >DroSec_CAF1 345260 99 + 1 CUUUUCACUUGCCGCGGUAAUGAAGCAAUUAAUUAUCGCAUCUCCACCCCGCCAC---------ACUAAGCCAUACCACCAAA-AACCCGGCGGAAUUCCUUAGAAGAG ((((((.......((((((((.((....)).)))))))).........(((((..---------...................-.....))))).........)))))) ( -22.57) >DroSim_CAF1 325115 99 + 1 CUUUUCACUCACCGCGGUAAUGAAGCAAUUAAUUAUCGCAUCUCCACCCCGCCAC---------ACUAAGCCAUACCACCAAA-AACCCGGCGGAAUUCCUUAGAAGAG ((((((.......((((((((.((....)).)))))))).........(((((..---------...................-.....))))).........)))))) ( -22.57) >DroEre_CAF1 333194 96 + 1 CUUUUCACCCGCCGCGGUAAUGAAGCAAUUAAUUAUCGCCUCUCC-CCCCGCCCC----------UCAAGCCAUUCCCCCAA--AACCCGGCCGAAUUCCUUAGAAGAG ((((((.......((((((((.((....)).))))))))......-.........----------..(((..((((..((..--.....))..))))..))).)))))) ( -17.50) >DroYak_CAF1 344510 101 + 1 CUUUUCACUCGCCGCGGUAAUGAAGCAAUUAAUUAUCGCAUCUCCACCCCGCCCCC--------ACUAAGCCAUUCCCCCAAAAAACCAGGCGGAAUUCCUUAGAAGAG .......(((...((((((((.((....)).)))))))).................--------.(((((..(((((.((.........)).)))))..)))))..))) ( -24.20) >DroAna_CAF1 320510 99 + 1 CCUUUCACUCGCCGCGGUAAUGAAGCAAUUAAUUAUCGCAUGUCUGCCCCACCACCACCCUCCGAAUAAGCCAUCU----------CCGGACGAAAUUCCUUAGAAAAG ..((((.......((((((((.((....)).))))))))...................(.((((............----------.)))).)..........)))).. ( -15.22) >consensus CUUUUCACUCGCCGCGGUAAUGAAGCAAUUAAUUAUCGCAUCUCCACCCCGCCAC_________ACUAAGCCAUACCACCAAA_AACCCGGCGGAAUUCCUUAGAAGAG ((((((.......((((((((..........)))))))).........(((((....................................))))).........)))))) (-14.89 = -15.75 + 0.86)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:28:09 2006