Locus 4731

Sequence ID 2R_DroMel_CAF1
Location 15,520,366 – 15,520,458
Length 92
Max. P 0.520930
window7613

overview

Window 3

Location 15,520,366 – 15,520,458
Length 92
Sequences 5
Columns 102
Reading direction forward
Mean pairwise identity 72.56
Mean single sequence MFE -21.48
Consensus MFE -3.00
Energy contribution -4.24
Covariance contribution 1.24
Combinations/Pair 1.15
Mean z-score -1.48
Structure conservation index 0.14
SVM decision value -0.02
SVM RNA-class probability 0.520930
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 15520366 92 + 20766785
--GUUGAUGUUUGGUACACUGGGAAGGAUAUCUUAUCUACUUGUGUCUAGCUUAGAU-UUUUGCAAGUUUCAGCUAG----UUAAGCCAUA--CAUAAA-UG
--(((.((((.((((((((.((...(((((...))))).)).))))((((((.((((-((....)))))).))))))----....)))).)--))).))-). ( -23.50)
>DroSec_CAF1 314231 99 + 1
AUGUUGAUGUUUGGUGCACUGAGAAGGAUAUCCUAUCUACUUGUAUCUCGCUUAGUGUUUUUGAAAGUCAAUGCAAGGAUAUUAAACCAUA--CAUAAA-GG
..((((((.((..(.((((((((..((((((...........))))))..))))))))..)..)).))))))....((........))...--......-.. ( -23.40)
>DroSim_CAF1 294131 96 + 1
AUGUUGAUGUUUGGUACACUGAAAAGGAUAUCUUAUCUACUUGUAUCUAGCUAAGAGU---UGAAAGUCAAGGCUAGGAUAUUAAGCCAUA--CAUGAA-GA
...((.((((.((((...((....))(((((((((....((((....((((.....))---)).....))))..)))))))))..)))).)--))).))-.. ( -22.30)
>DroEre_CAF1 302953 88 + 1
AUGCUGAUGUUUGGUACACUGAGAG-GAUA-----UCUACUUA-GGCUAGCUUAAUGU----UAAAGUCA-AGUAAGGAUAGGAAGCCAUA--CAUAAGAAG
...((.((((.((((...((....)-).((-----(((((((.-(((((((.....))----)..)))))-)))..)))))....)))).)--))).))... ( -19.80)
>DroYak_CAF1 311916 96 + 1
AUGUUGAUGUUUGAUACACUGAGAGGGAUA-----UCUACUUGUAGCUGGCCUAAAGU-GUAUAAAGUCAAAGUAAGGAGAUGAAGCCAUAUACAUAUGUAC
...(((((.....(((((((...(((..((-----.(((....))).)).)))..)))-))))...))))).(((.((........)).))).......... ( -18.40)
>consensus
AUGUUGAUGUUUGGUACACUGAGAAGGAUAUC_UAUCUACUUGUAUCUAGCUUAGAGU__UUGAAAGUCAAAGCAAGGAUAUUAAGCCAUA__CAUAAA_AG
......(((..((((..........((((.....)))).(((((.....((((...........))))....)))))........))))....)))...... ( -3.00 =  -4.24 +   1.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:27:59 2006