| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 2,667,713 – 2,667,811 |
| Length | 98 |
| Max. P | 0.761278 |
| Location | 2,667,713 – 2,667,811 |
|---|---|
| Length | 98 |
| Sequences | 3 |
| Columns | 100 |
| Reading direction | forward |
| Mean pairwise identity | 83.67 |
| Mean single sequence MFE | -22.53 |
| Consensus MFE | -14.01 |
| Energy contribution | -14.23 |
| Covariance contribution | 0.22 |
| Combinations/Pair | 1.09 |
| Mean z-score | -2.54 |
| Structure conservation index | 0.62 |
| SVM decision value | 0.50 |
| SVM RNA-class probability | 0.761278 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 2667713 98 + 20766785 CUAUCUGAGGGAUGAAGCGUUUUUCGCGAUAUUUAAUUAUU--CAUUAGUAGGUACCUACUACCUACUCUUUAACACCUUCCAAUAUCAGAAAGAACCCC ((.(((((.(((.(..(((.....)))..............--....((((((((.....)))))))).........).)))....))))).))...... ( -22.60) >DroSec_CAF1 100889 91 + 1 CUAUCUGAGGGAGGUCCCGUUUUUCGCG---------UAUCAGCAUUAGUUGGUACCUACUAACUACUCUUUAACACCUUCCAAUAUUAGAAAGAACCUU ((.((((((((((((..........((.---------.....))..((((((((....)))))))).........)))))))....))))).))...... ( -22.30) >DroSim_CAF1 99023 100 + 1 CUAUCUAAGGGAGGUCCCGUUUUUCGCGAUAUUGAAGUAUCCGCAUUAGUUGGUACCUACUACCUACUCUUUAGCACCUUCCAAUAUUAGAAAGAACCUU ((.((((((((((((.(........(((((((....)))).)))...(((.((((.....)))).))).....).)))))))....))))).))...... ( -22.70) >consensus CUAUCUGAGGGAGGUCCCGUUUUUCGCGAUAUU_AA_UAUC_GCAUUAGUUGGUACCUACUACCUACUCUUUAACACCUUCCAAUAUUAGAAAGAACCUU ((.(((((((((((...(((.....)))...................(((.((((.....)))).)))........))))))....))))).))...... (-14.01 = -14.23 + 0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:27 2006