| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 15,506,972 – 15,507,071 |
| Length | 99 |
| Max. P | 0.933886 |
| Location | 15,506,972 – 15,507,071 |
|---|---|
| Length | 99 |
| Sequences | 6 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 75.11 |
| Mean single sequence MFE | -30.13 |
| Consensus MFE | -19.00 |
| Energy contribution | -19.12 |
| Covariance contribution | 0.11 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.77 |
| Structure conservation index | 0.63 |
| SVM decision value | 1.23 |
| SVM RNA-class probability | 0.933886 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 15506972 99 + 20766785 -UGUGGC-UCUUCCAGGCAC--U--UUGCCCCCGCGUUGCGUAUACGCUCAGUUGCACCGCAAAAUGAGCGAAAGUCGCAGCGUCUAUUUGCCAUGGCAAUGGUA -.(((((-.......(((..--.--..)))...((((((((....((((((.((((...))))..)))))).....))))))))......))))).......... ( -34.60) >DroVir_CAF1 406274 96 + 1 ----CAC-ACUUCAAAAGGUCUCACACUGUUGCACGUUGCGUAUACGCUCAGUUGCACCACAAAAUGAGCGAAAAUCGCGCCAUCUAUUUGCCAUGGCAAU---- ----...-.........(((.(((...((((((((...(((....)))...).))))..)))...)))(((.....))))))......((((....)))).---- ( -21.10) >DroPse_CAF1 339656 95 + 1 -GGUGGC-------AAGCAC--CGGUCUACCCCGUGUUGCGUAUACGCUCAGUUGCACCGCAAAAUGAGCGAAAAUCGCAGCAUCUAUUUGCCAUGGCAAUGGAA -((((..-------...)))--)((......)).(((((((....((((((.((((...))))..)))))).....)))))))((((((.((....)))))))). ( -34.20) >DroWil_CAF1 564672 104 + 1 -AAUACCAACUUCAACUCAUUCCAACCUCCCGCAUAUUGCGCAUACGCUCAGUUGCAUCGCAAAAUGGGCGAAAAUCUCAGCGUCUAUUUGUCAUGGCAAUGGGA -..............(((((((((.......(((.((((.((....)).)))))))...(((((.((((((..........)))))))))))..))).)))))). ( -25.20) >DroAna_CAF1 277122 100 + 1 AUGCGGC-UCUUCCAGGCAC--U--UUGCCCCCGCGUUGCGUAUACGCUCAGUUGCACCACAAAAUAAGUGAGAAUCGCAGCUUCUAUUUGCCAUGGCAAUGGCA .((((..-(((..(.(((..--.--..)))...(((..(((....))).....)))............)..)))..)))).........((((((....)))))) ( -29.30) >DroPer_CAF1 303299 95 + 1 -GGUGGC-------AGGCAC--CGGUCUACCCCGCGUUGCGUAUACGCUCAGUUGCACCGCAAAAUGAGCGAAAAUCGCAGCAUCUAUUUGCCAUGGCAAUGGAA -((.((.-------((((..--..)))).))))..((((((....((((((.((((...))))..)))))).....)))))).((((((.((....)))))))). ( -36.40) >consensus _GGUGGC__CUUC_AGGCAC__C__UCUCCCCCGCGUUGCGUAUACGCUCAGUUGCACCGCAAAAUGAGCGAAAAUCGCAGCAUCUAUUUGCCAUGGCAAUGGAA ...................................((((((....((((((.(((.....)))..)))))).....))))))......((((....))))..... (-19.00 = -19.12 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:27:48 2006