| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 15,488,467 – 15,488,587 |
| Length | 120 |
| Max. P | 0.950590 |
| Location | 15,488,467 – 15,488,564 |
|---|---|
| Length | 97 |
| Sequences | 5 |
| Columns | 97 |
| Reading direction | forward |
| Mean pairwise identity | 94.02 |
| Mean single sequence MFE | -23.19 |
| Consensus MFE | -18.86 |
| Energy contribution | -19.38 |
| Covariance contribution | 0.52 |
| Combinations/Pair | 1.15 |
| Mean z-score | -2.05 |
| Structure conservation index | 0.81 |
| SVM decision value | 1.40 |
| SVM RNA-class probability | 0.950590 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 15488467 97 + 20766785 GCGCUCGAGAAGAAAAAACUCACACACUCCGGCCAACUCAAACAAACGGUCGGGCCAACUCAAGUUGGCGUCUAGGAAUUCCGCUAGCCUAAACAAA ......(((.........))).......((((((.............))))))((((((....))))))((.((((...........)))).))... ( -23.92) >DroSec_CAF1 281151 97 + 1 GCGCUCGAGAAGAAAAAACUCACACACUCCGGCCAACUCAAACAAACGGUCGGGCCAACUCAAGUUGGCGUCUAGGAAUUCCGCUAGCCCAAACAAA (.(((.((((..................((((((.............))))))((((((....)))))).))).((....)).).))).)....... ( -23.82) >DroSim_CAF1 260117 97 + 1 UCGCUCGAGAAGAAAAAACUCACACACUCCGGCCAACUCAAACAAACGGUCGGGCCAACUCAAGUUGGCGUCUAGGAAUUCCGCUAGCCCAAACAAA ..(((.((((..................((((((.............))))))((((((....)))))).))).((....)).).)))......... ( -23.72) >DroEre_CAF1 269363 97 + 1 ACGCUCGAGAAGAAAAAACUCACACACUCCGGCCAACUCAAACAAACGGCCAGGCCAACUUAAGUUGGCGUCUAGGAAUUCCGCUAGCCCAAACAAA ..(((((.(((((......))......(((((((.............))))..((((((....)))))).....))).)))))..)))......... ( -23.72) >DroYak_CAF1 279430 96 + 1 ACGCUCGGGAAGAAAAAACUCACACACUACGGGCAACUCAAACAAACUGUUAGGCCAACUCAAGUUGGCGUCUACGAAUUCCGCUGGC-CAAACAAA ..(((((......................))))).............((((.(((((((....))))))(((..((.....))..)))-).)))).. ( -20.75) >consensus ACGCUCGAGAAGAAAAAACUCACACACUCCGGCCAACUCAAACAAACGGUCGGGCCAACUCAAGUUGGCGUCUAGGAAUUCCGCUAGCCCAAACAAA ..(((((.(((.................((((((.............))))))((((((....)))))).........)))))..)))......... (-18.86 = -19.38 + 0.52)
| Location | 15,488,496 – 15,488,587 |
|---|---|
| Length | 91 |
| Sequences | 5 |
| Columns | 91 |
| Reading direction | forward |
| Mean pairwise identity | 94.73 |
| Mean single sequence MFE | -23.44 |
| Consensus MFE | -18.30 |
| Energy contribution | -18.50 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.67 |
| Structure conservation index | 0.78 |
| SVM decision value | 0.07 |
| SVM RNA-class probability | 0.569909 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 15488496 91 + 20766785 CGGCCAACUCAAACAAACGGUCGGGCCAACUCAAGUUGGCGUCUAGGAAUUCCGCUAGCCUAAACAAAAGUUAAGCGCAAAGGAGCCAAAC (((((.............))))).((((((....)))))).....((...(((....((((.(((....))).)).))...))).)).... ( -24.72) >DroSec_CAF1 281180 91 + 1 CGGCCAACUCAAACAAACGGUCGGGCCAACUCAAGUUGGCGUCUAGGAAUUCCGCUAGCCCAAACAAAAGUUAAGCGCAAAGGAGCCAAGC (((((.............))))).((((((....)))))).....((...(((....((...(((....)))..)).....))).)).... ( -22.72) >DroSim_CAF1 260146 91 + 1 CGGCCAACUCAAACAAACGGUCGGGCCAACUCAAGUUGGCGUCUAGGAAUUCCGCUAGCCCAAACAAAAGUUAAGCGCAAAGGAGCCAAAC (((((.............))))).((((((....)))))).....((...(((....((...(((....)))..)).....))).)).... ( -22.72) >DroEre_CAF1 269392 91 + 1 CGGCCAACUCAAACAAACGGCCAGGCCAACUUAAGUUGGCGUCUAGGAAUUCCGCUAGCCCAAACAAAAGUUAAGCGCAAAGGAGCCAAAC .((((.............))))..((((((....)))))).....((...(((....((...(((....)))..)).....))).)).... ( -23.72) >DroYak_CAF1 279459 90 + 1 CGGGCAACUCAAACAAACUGUUAGGCCAACUCAAGUUGGCGUCUACGAAUUCCGCUGGC-CAAACAAAAGUUAAGCGCAAAGGAGCCAAGC ..(((.............(((.(.((((((....)))))).)..)))...(((..((((-..(((....)))..)).))..)))))).... ( -23.30) >consensus CGGCCAACUCAAACAAACGGUCGGGCCAACUCAAGUUGGCGUCUAGGAAUUCCGCUAGCCCAAACAAAAGUUAAGCGCAAAGGAGCCAAAC .(((....................((((((....))))))..........(((....((...(((....)))..)).....)))))).... (-18.30 = -18.50 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:27:38 2006