Locus 4720

Sequence ID 2R_DroMel_CAF1
Location 15,487,887 – 15,487,987
Length 100
Max. P 0.555968
window7593

overview

Window 3

Location 15,487,887 – 15,487,987
Length 100
Sequences 4
Columns 116
Reading direction forward
Mean pairwise identity 69.75
Mean single sequence MFE -24.93
Consensus MFE -11.48
Energy contribution -13.98
Covariance contribution 2.50
Combinations/Pair 1.18
Mean z-score -1.86
Structure conservation index 0.46
SVM decision value 0.04
SVM RNA-class probability 0.555968
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 15487887 100 + 20766785
ACUAAGGGCGAUUCAGGAUUGC-----AAAA-----------CUUCUGCUAUCAAAAAGAGGUAGCUUAUAAUAGUUAUCAGGUUCCUAAUUUCCAAGUUCCAAGAAAUGUCAUGU
......((((.(((..(((.((-----(...-----------....))).))).......(((((((......))))))).((...((........))..))..))).)))).... ( -17.10)
>DroSec_CAF1 280559 111 + 1
ACUGAGGGCAAUUUGGGAGUCC-----AAAAUUAAACUUAACCUUCGACUAUCAAAAAAUGGUGGAUAAUAAUAGUUAUUAGGUCCCAAACUGCCAAGUUCCAGGAAAUUUCCUGU
(((...((((.(((((((..((-----.................((.(((((......))))).))(((((.....)))))))))))))).)))).)))..(((((....))))). ( -30.30)
>DroSim_CAF1 259525 111 + 1
ACUGAGGGCAAUUUGGGAGUCC-----AAAAUUAAACUUAUCCUUCGACUAUCAAAAAAUGGUGGAUAAUAAUAGUUAUUAGGUCCCAAACUGCCAAGUUCCAGGAAAUUUCCUUU
(((...((((.(((((((.(..-----..(((((...((((((....(((((......)))))))))))...)))))....).))))))).)))).)))...((((....)))).. ( -28.70)
>DroEre_CAF1 268759 108 + 1
AUCAACGUCAAUUUGGGACAACAUUUGAAUUUUAAACGAAACCUUCGCGCAUCAACAAGAUGUGGGUAAUCAU---UA-AAGAUCCCCAAUUGCCAAGUCCCAGGCAGUUUC----
......(((....((((((.................(((.....)))((((((.....))))))((..(((..---..-..)))..)).........)))))))))......---- ( -23.60)
>consensus
ACUAAGGGCAAUUUGGGAGUCC_____AAAAUUAAACUUAACCUUCGACUAUCAAAAAAAGGUGGAUAAUAAUAGUUAUUAGGUCCCAAACUGCCAAGUUCCAGGAAAUUUCCUGU
......((((((((((((..............................(((((.......))))).(((((.....)))))..))))))))))))..................... (-11.48 = -13.98 +   2.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:27:36 2006