Locus 4718

Sequence ID 2R_DroMel_CAF1
Location 15,456,596 – 15,456,690
Length 94
Max. P 0.745960
window7591

overview

Window 1

Location 15,456,596 – 15,456,690
Length 94
Sequences 6
Columns 104
Reading direction reverse
Mean pairwise identity 76.12
Mean single sequence MFE -29.80
Consensus MFE -14.79
Energy contribution -15.15
Covariance contribution 0.36
Combinations/Pair 1.26
Mean z-score -1.94
Structure conservation index 0.50
SVM decision value 0.46
SVM RNA-class probability 0.745960
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 15456596 94 - 20766785
GCUGC--AAA------AUCUCAAAGCAUACUUUCGGGCGGCGCUGAAAAAAGUGCUCGUGAAAGCGUAGUAGAA--AAACGGGCUGCAACGGGCUGUUCGUGUG
(((((--...------..((.((((....)))).))((((((((......))))).)))......)))))....--..((((((.((.....)).))))))... ( -25.70)
>DroVir_CAF1 349553 101 - 1
GCGACUGAAAUUUCAAAUUUCAAAGCAUACUUUUAGGCGCCGCUGAAAAAAGUGCUCGAGAAAGUGUUGCCGCAGCAAACGGGCCAC---UGGCUGCCAUUGCA
((((.((((((.....))))))..((((((((((...((.((((......))))..)).))))))).))).(((((...(((....)---)))))))..)))). ( -27.20)
>DroPse_CAF1 294605 97 - 1
GCGGC--AGA-UGCGGAUUUCAAAGCAUACUUUCAGGCGGCACUGAAAAAAGUGCUCGAGAAAGUGUAGUAGAA--AAACGGGCUGCUGCCGGCACGC--UGUG
(((((--((.-(.((..((((...((((((((((...(((((((......))))).)).)))))))).)).)))--)..)).))))))))(((....)--)).. ( -37.10)
>DroEre_CAF1 241651 87 - 1
GCUGC--AGA------AUCUCAAAGCAUACUUUCGGGCGGCGCUGAAAAAAGUGCUCGUGAAAGUGUAGUAGAA--AAACGGGCUGUAUCUGUGUGC-------
(((((--(((------.......((((((((((((.(.((((((......))))))).))))))))).((....--..))..)))...)))))).))------- ( -26.50)
>DroWil_CAF1 494962 95 - 1
GCGGC--AGC-UACAAAUUUCAAAGCAUACUUUUAGGCGCCACUGAAAAAAGUACUCGAGAAAGUAUAGUAGAA--AAACGGGCUGCUGCCUUGACUG--UG--
(((((--(((-(.....((((...((((((((((...((..(((......)))...)).)))))))).)).)))--)....)))))))))........--..-- ( -26.40)
>DroPer_CAF1 256454 97 - 1
GCGGC--AGA-UGCGGAUUUCAAAGCAUACUUUCAGGCGGCACUGAAAAAAGUGCUCGAGAAAGUGUAGUAGAA--AAACGGGCUGCUGCCGUCACGC--UGUG
(((((--((.-(.((..((((...((((((((((...(((((((......))))).)).)))))))).)).)))--)..)).))))))))........--.... ( -35.90)
>consensus
GCGGC__AGA_U_C__AUUUCAAAGCAUACUUUCAGGCGGCACUGAAAAAAGUGCUCGAGAAAGUGUAGUAGAA__AAACGGGCUGCUGCCGGCACCC__UGUG
(((((...................((((((((((...(((((((......))))).)).)))))))).)).(.......)..)))))................. (-14.79 = -15.15 +   0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:27:34 2006