Locus 4717

Sequence ID 2R_DroMel_CAF1
Location 15,455,917 – 15,456,010
Length 93
Max. P 0.641211
window7590

overview

Window 0

Location 15,455,917 – 15,456,010
Length 93
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 82.95
Mean single sequence MFE -28.38
Consensus MFE -22.66
Energy contribution -22.52
Covariance contribution -0.14
Combinations/Pair 1.04
Mean z-score -1.58
Structure conservation index 0.80
SVM decision value 0.22
SVM RNA-class probability 0.641211
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 15455917 93 - 20766785
UCU-----------------UUUUGUCUUCGGCAAGUCAUUCAUGUGUGCAAUCUGUGGGUGUGACUAAUUCAAUUACAACGCCCAAUUGUGCAUGCCUCGGUGCUU----------GUC
...-----------------..........((((((.(((..(.(((((((.....(((((((...((((...))))..)))))))....))))))).)..))))))----------))) ( -28.80)
>DroGri_CAF1 309140 105 - 1
UUGUUGCUGCUCUCU-----UUUUGUCUUCGGCAAGUCAUUCAUGUGUGCAAUCUGUGGGUGUGACUAAUUCAAUUACAACGCCCAAUUGUGCAUGCCUCGGCGCUU----------GCA
...............-----...........((((((.......(((..((((...(((((((...((((...))))..)))))))))))..)))((....))))))----------)). ( -28.40)
>DroEre_CAF1 240953 93 - 1
UCU-----------------UUUUGUCUUCGGCAAGUCAUUCAUGUGUGCAAUCUGUGGGUGUGACUAAUUCAAUUACAACGCCCAAUUGUGCAUGCCUCGGCGCCC----------GUC
...-----------------..........(((...........(((..((((...(((((((...((((...))))..)))))))))))..)))((....))))).----------... ( -25.60)
>DroWil_CAF1 492384 103 - 1
UCU-----------------UUUUGUCUUGGGCAAGUUAUUCAUGUGUGCAAUCUGUGGGUGUGACUAAUUCAAUUACAACGCCCAAUUGUGCAUGCCUCGGCGAAUGACGGUGACAGUC
...-----------------..((((.....))))(((((((..(((..((((...(((((((...((((...))))..)))))))))))..)))((....)))))))))(....).... ( -32.50)
>DroMoj_CAF1 390769 110 - 1
UCUGUCUCGCUCUCUGGCGCUUUUGUCUUCGGCAAGUCAUUCAUGUGUGCAAUCUGUGGGUGUGACUAAUUCAAUUACAACGCCCAAUUGUGCAUGCCUCGGCGCAU----------GCA
........((......(((((((((.(....)))))........(((((((.....(((((((...((((...))))..)))))))....)))))))...)))))..----------)). ( -31.40)
>DroPer_CAF1 255586 93 - 1
UCC-----------------CUUUGUCUCCGGCAAGUCAUUCAUGUGUGCAAUCUGUGGGUGUGACUAAUUCAAUUACAACGCCCAAUUGUGCAUGCCCCGGCACUC----------CUC
...-----------------...((((...(((..(.....)..(((..((((...(((((((...((((...))))..)))))))))))..))))))..))))...----------... ( -23.60)
>consensus
UCU_________________UUUUGUCUUCGGCAAGUCAUUCAUGUGUGCAAUCUGUGGGUGUGACUAAUUCAAUUACAACGCCCAAUUGUGCAUGCCUCGGCGCUU__________GUC
.....................(((((.....)))))........(((..((((...(((((((...((((...))))..)))))))))))..)))((....))................. (-22.66 = -22.52 +  -0.14)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:27:33 2006