Locus 4714

Sequence ID 2R_DroMel_CAF1
Location 15,450,171 – 15,450,268
Length 97
Max. P 0.739652
window7586

overview

Window 6

Location 15,450,171 – 15,450,268
Length 97
Sequences 5
Columns 97
Reading direction forward
Mean pairwise identity 89.97
Mean single sequence MFE -45.16
Consensus MFE -37.46
Energy contribution -39.50
Covariance contribution 2.04
Combinations/Pair 1.03
Mean z-score -1.50
Structure conservation index 0.83
SVM decision value 0.45
SVM RNA-class probability 0.739652
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 15450171 97 + 20766785
GGACGGCUGCAGCUUGGUGGGCGGAGCCUGCUGGGCACCGCGAGCGCAGAUACUUAAGUGAUGCCUCGUCCGCCGGAGUCCGCUGUCCAACGUCCGC
(((((...(((((..(((((((((.(((.....))).))))(((.(((..(((....))).))))))..)))))((...)))))))....))))).. ( -46.90)
>DroSec_CAF1 248082 97 + 1
GGACGGCUGCAGCUUGGUGGGCGGAGCCUGCUGGGCACCGCGAGCGCAGAUACUUAAGUGAUGCCUCGUCCGCCGGAGUCCGCUGUCCGACGUCCGC
(((((...(((((..(((((((((.(((.....))).))))(((.(((..(((....))).))))))..)))))((...)))))))....))))).. ( -46.90)
>DroSim_CAF1 227081 97 + 1
GGACGGCUGCAGCUUGGUGGGCGGAGCCUGCUGGGCACCGCGAGCGCAGAUACUUAAGUGAUGCCUCGUCCGCCGGAGUCCGCUGUCCGACGUCCGC
(((((...(((((..(((((((((.(((.....))).))))(((.(((..(((....))).))))))..)))))((...)))))))....))))).. ( -46.90)
>DroEre_CAF1 235205 77 + 1
GGACGGCUGCAGCUUGGUGGGCGGAGCCUGCUGGGCACCGCGAGCGCAGAUACUUAAGUGAUGCCUCGUCCGCC---GUC-----------------
.((((((....(((..(..(((...)))..)..)))...(((((.(((..(((....))).))))))))..)))---)))----------------- ( -38.00)
>DroYak_CAF1 243410 94 + 1
GGACGGCUGCAGCUUGGUGGGCGGAGCCUGCUGGGCACCGCGAGCGCAGAUACUUAAGUGAUGCCUCGUCCGCU---GUCCGCUGUCCACCGUCCGC
((((((..(((((.((((((((((.(((.....))).))))(((.(((..(((....))).))))))..)))))---)...)))))...)))))).. ( -47.10)
>consensus
GGACGGCUGCAGCUUGGUGGGCGGAGCCUGCUGGGCACCGCGAGCGCAGAUACUUAAGUGAUGCCUCGUCCGCCGGAGUCCGCUGUCCAACGUCCGC
(((((((.(..(((((((((((((.(((.....))).))))(((.(((..(((....))).))))))..))))).))))).)))))))......... (-37.46 = -39.50 +   2.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:27:29 2006