| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 15,447,001 – 15,447,108 |
| Length | 107 |
| Max. P | 0.938263 |
| Location | 15,447,001 – 15,447,108 |
|---|---|
| Length | 107 |
| Sequences | 6 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 94.74 |
| Mean single sequence MFE | -18.86 |
| Consensus MFE | -18.41 |
| Energy contribution | -18.41 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.09 |
| Structure conservation index | 0.98 |
| SVM decision value | 1.29 |
| SVM RNA-class probability | 0.938263 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 15447001 107 + 20766785 CUAAAAUUUAAAUUCAUACACGAUCGUUGGCCCCAAAAAGACUAAUGAGCACAAUUAUGCAUUAUUGCAGCUCGUUGCAUCGAAAAUGAACUUUAACAAGCCUCGG-C------- .......((((((((((...(((((.(((....)))...)).((((((((.......((((....))))))))))))..)))...))))).)))))...((....)-)------- ( -19.31) >DroPse_CAF1 284665 107 + 1 CUAAAAUUUAAAUUCAUACACGAUCGUUGGCCCCAAAAAGACUAAUGAGCACAAUUAUGCAUUAUUGCAGCUCGUUGCAUCGAAAAUGAACUUUAACAAGGCUCGG-C------- .......((((((((((...(((((.(((....)))...)).((((((((.......((((....))))))))))))..)))...))))).)))))..........-.------- ( -18.41) >DroGri_CAF1 296857 114 + 1 CUAAAAUUUAAAUUCAUACACGAUCGUUGGCCCCAAAAAGACUAAUGAGCACAAUUAUGCAUUAUUGCAGCUCGUUGCAUCGAAAAUGAACUUUAACAAGCCUCAA-CACACACA .......((((((((((...(((((.(((....)))...)).((((((((.......((((....))))))))))))..)))...))))).)))))..........-........ ( -18.41) >DroMoj_CAF1 376160 115 + 1 CUAAAAUUUAAAUUCAUACACGAUCGUUGGCCCCAAAAAGACUAAUGAGCACAAUUAUGCAUUAUUGCAGCUCGUUGCAUCGAAAAUGAACUUUAACAAGCCUCACACACACACA .......((((((((((...(((((.(((....)))...)).((((((((.......((((....))))))))))))..)))...))))).)))))................... ( -18.41) >DroAna_CAF1 225523 107 + 1 CUAAAAUUUAAAUUCAUACACGAUCGUUGGCCCCAAAAAGACUAAUGAGCACAAUUAUGCAUUAUUGCAGCUCGUUGCAUCGAAAAUGAACUUUAACAAGCCCCGG-C------- .......((((((((((...(((((.(((....)))...)).((((((((.......((((....))))))))))))..)))...))))).)))))...((....)-)------- ( -19.31) >DroPer_CAF1 246510 107 + 1 CUAAAAUUUAAAUUCAUACACGAUCGUUGGCCCCAAAAAGACUAAUGAGCACAAUUAUGCAUUAUUGCAGCUCGUUGCAUCGAAAAUGAACUUUAACAAGCCUCGG-C------- .......((((((((((...(((((.(((....)))...)).((((((((.......((((....))))))))))))..)))...))))).)))))...((....)-)------- ( -19.31) >consensus CUAAAAUUUAAAUUCAUACACGAUCGUUGGCCCCAAAAAGACUAAUGAGCACAAUUAUGCAUUAUUGCAGCUCGUUGCAUCGAAAAUGAACUUUAACAAGCCUCGG_C_______ .......((((((((((...(((((.(((....)))...)).((((((((.......((((....))))))))))))..)))...))))).)))))................... (-18.41 = -18.41 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:27:28 2006