Locus 4712

Sequence ID 2R_DroMel_CAF1
Location 15,439,539 – 15,439,651
Length 112
Max. P 0.627103
window7584

overview

Window 4

Location 15,439,539 – 15,439,651
Length 112
Sequences 5
Columns 113
Reading direction forward
Mean pairwise identity 90.72
Mean single sequence MFE -17.94
Consensus MFE -16.48
Energy contribution -16.28
Covariance contribution -0.20
Combinations/Pair 1.17
Mean z-score -1.21
Structure conservation index 0.92
SVM decision value 0.19
SVM RNA-class probability 0.627103
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 15439539 112 + 20766785
AAUGGAGUUGAAUAAGUUCAUUGCAAAUGAAAAAUGUCUUGGAAACAAGAGUUUAAUAGCGCAUUCAGCUUAUAAUUAAAUUUAACAGAAG-GAAAAAAACAAGAACUAAAUG
....(((((((((..((((((.....))))......(((((....)))))........))..)))))))))....................-..................... ( -19.00)
>DroSec_CAF1 237338 111 + 1
AAUGGAGUUGAAUAAGUUCAUUGCAAAUGAAAAAUGUCUUGGGAACAAGAGUUUAAGAGCGCAUUCAGCUUAUAAUUAAAUUUAACAGAAG-GAAA-AAUCUAGAACUAAAUG
....(((((((((..((((........(....)...(((((....)))))......))))..)))))))))....................-....-................ ( -19.60)
>DroSim_CAF1 216240 111 + 1
AAUGGAGUUGAAUAAGUUCAUUGCAAAUGAAAAAUGUCUUGGGAACAAGAGUUUAAUAACGCAUUCAGCUUAUAAUUAAAUUUAACAGAAG-GAAA-AAACUAGAACUAAAUG
....(((((((((...(((((.....))))).....(((((....)))))............)))))))))....................-....-................ ( -17.50)
>DroEre_CAF1 224568 112 + 1
AAUGGAGUUGGAUAAGUUCACUGCAAAUGAAAAAUGUCUUGGGAACGAGAAUUUAAUAGCGCAUUCAGCUAAUAAUUAAAUUUAAAAAGACGGGAG-AAACUAGAGCUAAAUG
..(((..((((.....(((.((((............(((((....)))))..(((.((((.......)))).))).............).))))))-...))))..))).... ( -17.80)
>DroYak_CAF1 232198 112 + 1
AAUGAAGUUGAAUAAGUUCAUUGCAAAUGAAAAAUGUCUUGGGAACGAGAAUUUAAUAGCGCAUUCAGCUAAUAAUUAAAUUUAAAAGGAGGGGAA-AAAGUAGAGCUAACUG
.....((((((((..((((((.....))))......(((((....)))))........))..))))))))..........................-................ ( -15.80)
>consensus
AAUGGAGUUGAAUAAGUUCAUUGCAAAUGAAAAAUGUCUUGGGAACAAGAGUUUAAUAGCGCAUUCAGCUUAUAAUUAAAUUUAACAGAAG_GAAA_AAACUAGAACUAAAUG
....(((((((((..((((((.....)))).((((.(((((....)))))))))....))..))))))))).......................................... (-16.48 = -16.28 +  -0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:27:27 2006