Locus 4711

Sequence ID 2R_DroMel_CAF1
Location 15,437,113 – 15,437,225
Length 112
Max. P 0.698332
window7583

overview

Window 3

Location 15,437,113 – 15,437,225
Length 112
Sequences 5
Columns 113
Reading direction forward
Mean pairwise identity 73.12
Mean single sequence MFE -23.66
Consensus MFE -11.54
Energy contribution -11.70
Covariance contribution 0.16
Combinations/Pair 1.40
Mean z-score -1.77
Structure conservation index 0.49
SVM decision value 0.35
SVM RNA-class probability 0.698332
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 15437113 112 + 20766785
UACAAUAUAAGACUUAUAUUAAAUAUCAUUUGU-AAUUUUCCCGCCAAAUCAGGGCUAUUUCUCUGCACACUGCUGUCUAUCUAAGUGGGCGGAGGACAUUGCAACCAUCUAA
...((((((.....)))))).........((((-(((.((((((((....(((((......)))))..((((............))))))))).))).)))))))........ ( -26.00)
>DroSec_CAF1 234973 88 + 1
----------------------AUAUCAUUUAUCAAUUUUUCCGCCAGGUCAUCACUAUUU--CUGUACACCGCUGUCUAUCUAAGUGGGCGGAGGACAU-GCAGCCAUCUAA
----------------------...............((((((((((((...........)--)))....(((((.........)))))))))))))...-............ ( -17.50)
>DroSim_CAF1 213837 90 + 1
----------------------AUAUCAUUUAUCAAUUUUUCCGCCAAGUCAUCACUAUUUCUCUGUACAUUGCUGUAUGUCUAAGUGGGCGGAGGACAU-GCAGCCAUCUAA
----------------------..................................................(((((((((((..(....)...))))))-)))))....... ( -16.50)
>DroEre_CAF1 222219 91 + 1
----------------------AUAUGCGUUGUUAUACACUCUGCCAAAUCAGUGCUAUUUUUCUGUACACUGCUGUCCAUCUGGGUGGGCGGAGGACAUUGCAGCCAUCUAA
----------------------..(((.(((((......(((((((....(((((.(((......)))))))).(..((....))..))))))))......)))))))).... ( -28.00)
>DroYak_CAF1 229746 91 + 1
----------------------ACAUACUUUGUAAUGUUCUGUGCUCAAUCAGUACUAUUUUUGUGUACAGUGCUGUCCAUCUGAGUGGGCGGAGGACAUUGCAGCCAUCUAA
----------------------.......((((((((((((.((((((.((((..........(((.(((....))).))))))).)))))).))))))))))))........ ( -30.30)
>consensus
______________________AUAUCAUUUGUCAAUUUUUCCGCCAAAUCAGCACUAUUUCUCUGUACACUGCUGUCUAUCUAAGUGGGCGGAGGACAUUGCAGCCAUCUAA
.............................((((....(((((((((........((.........)).((((...(.....)..)))))))))))))....))))........ (-11.54 = -11.70 +   0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:27:26 2006