| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 15,408,635 – 15,408,736 |
| Length | 101 |
| Max. P | 0.862491 |
| Location | 15,408,635 – 15,408,736 |
|---|---|
| Length | 101 |
| Sequences | 6 |
| Columns | 107 |
| Reading direction | reverse |
| Mean pairwise identity | 75.10 |
| Mean single sequence MFE | -19.75 |
| Consensus MFE | -10.32 |
| Energy contribution | -11.27 |
| Covariance contribution | 0.95 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.94 |
| Structure conservation index | 0.52 |
| SVM decision value | 0.83 |
| SVM RNA-class probability | 0.862491 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 15408635 101 - 20766785 UCUGAUGGUGAGUGCCACA---CAUUUGUCAUGUGCCCCGCACAAAACAUGUCAGUGCCCAUUUCAAUCUGGUUUCCUUUCCUGCCACCUUGUCCCGC--CCAAAU- .(((((((..((((.....---))))..)).(((((...)))))......))))).((......(((..((((..........))))..)))....))--......- ( -18.90) >DroVir_CAF1 287996 87 - 1 U---GUACCAUAUGCCACA-------UGUCAUGUGCCCCGCACAAAACAUGUCACUGCCCAUUUUAUCCUUGCU-----UCCUGCCACCUUUU---GC--CCAAACA .---.........((.(((-------(((..(((((...)))))..))))))...................((.-----....))........---))--....... ( -12.40) >DroPse_CAF1 243947 97 - 1 U---GUGGCAUAUGCCACAUGUCAUUUG-CUUGUGCCCCGCACAAAACGUGUCACUGCCCAUUUCAUCCCGGCU-----UCCUGCCACCUUUCCCUGCUCCUAGAU- (---(((((....))))))((.(((.(.-.((((((...)))))).).))).))................(((.-----....)))....................- ( -22.30) >DroEre_CAF1 201152 101 - 1 UCUGAUGGUGAGUGCCACA---CAUGUGUCAUGUGCCCCGCACAAAACAUGUCACUGCCCAUUUCAAUCCGGAUUCCUUUCCUGCCACCUCGUCCCGC--CCAAAU- ...((.((((((((....(---(((((....(((((...)))))..))))))))))..............(((......)))...)))))).......--......- ( -23.10) >DroAna_CAF1 191937 79 - 1 U---GUGGCAUAUGCCACA-------UGUCAUGUGCCCCGCACAAAACAUGUCACUGCCCAUUUCAUCCUUGCU-----UCCUGCCACCUUUCC------------- .---((((((......(((-------(((..(((((...)))))..))))))....((.............)).-----...))))))......------------- ( -19.52) >DroPer_CAF1 203951 97 - 1 U---GUGGCAUAUGCCACAUGUCAUUUG-CUUGUGCCCCGCACAAAACGUGUCACUGCCCAUUUCAUACCGGCU-----UCCUGCCACCUUUCCCUGCUCCUAGAU- (---(((((....))))))((.(((.(.-.((((((...)))))).).))).))................(((.-----....)))....................- ( -22.30) >consensus U___GUGGCAUAUGCCACA___CAUUUGUCAUGUGCCCCGCACAAAACAUGUCACUGCCCAUUUCAUCCCGGCU_____UCCUGCCACCUUUCCC_GC__CCAAAU_ ....(((((....)))))........(((..(((((...)))))..))).....................(((..........)))..................... (-10.32 = -11.27 + 0.95)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:27:17 2006