Locus 4705

Sequence ID 2R_DroMel_CAF1
Location 15,407,406 – 15,407,496
Length 90
Max. P 0.534746
window7573

overview

Window 3

Location 15,407,406 – 15,407,496
Length 90
Sequences 6
Columns 119
Reading direction forward
Mean pairwise identity 83.18
Mean single sequence MFE -38.22
Consensus MFE -24.45
Energy contribution -24.23
Covariance contribution -0.22
Combinations/Pair 1.06
Mean z-score -2.02
Structure conservation index 0.64
SVM decision value 0.00
SVM RNA-class probability 0.534746
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 15407406 90 + 20766785
ACUUGCCGCCGG------AAGUGGCAGUGCU------------GCAAAUAA-AAUGGCGGCG---------CGUCUGCUGGCAUCGCAUUU-UGGUCAUUUUUGCGGCGCCAUUGAACA
...(((((.(..------..))))))(((((------------((......-....))))))---------)((..(.((((..((((...-..........))))..)))).)..)). ( -33.32)
>DroVir_CAF1 285794 101 + 1
AAUGGCCGCCGG------AAGUGGCAGUGCU------------GCAAAUAAAAAUGGCGGCGGCGGUGGCGCCUUUGCUGGCAGCGCAUUUUUGGUCAUUUUUGCGGCGCCAUUGAACA
((((((.(((((------(((((((.(((((------------((..........(((((.((((....)))).))))).))))))).......))))))))..))))))))))..... ( -42.40)
>DroPse_CAF1 242421 96 + 1
ACUGGCCGCCGGAUGUGGAAGUGGCGUUGCU------------GCAAAUAA-AACGGCGGCG---------CGUCUGCUGGCAUCGCAUUU-UGGUCAUUUUUGCGGCGCCAUUGAACA
..((((.(((((((((.((((((((((((((------------(.......-..))))))))---------)(((....)))....)))))-).).))))....))))))))....... ( -35.30)
>DroGri_CAF1 250242 105 + 1
AAUGGCCGCCGG------AAGUGGCAGUGCUGCUGCUGCUACUGCAAAUAAAAAUGGCGGCG-------CCUCUUUGCUGGCAGCGCAUUU-UGGUCAUUUUUGCGGCGCCAUUGAACA
((((((.(((((------(((((((.(((((((((((((((.............)))))))(-------(......)).))))))))....-..))))))))..))))))))))..... ( -43.62)
>DroMoj_CAF1 309795 96 + 1
AAUGGCCGCCGG------AAGUGGCAGUGCU------------GCAAAUAAAAAUGGCGGCG-----GGCGCCUUUGCUGGCAGCGCAUUUUCGGUCAUUUUUGCGGCGCCAUUGAACA
((((((.(((((------(((((((.(((((------------((......(((.((((...-----..)))))))....))))))).......))))))))..))))))))))..... ( -39.40)
>DroPer_CAF1 202460 96 + 1
ACUGGCCGCCGGAUGUGGAAGUGGCGUUGCU------------GCAAAUAA-AACGGCGGCG---------CGUCUGCUGGCAUCGCAUUU-UGGUCAUUUUUGCGGCGCCAUUGAACA
..((((.(((((((((.((((((((((((((------------(.......-..))))))))---------)(((....)))....)))))-).).))))....))))))))....... ( -35.30)
>consensus
AAUGGCCGCCGG______AAGUGGCAGUGCU____________GCAAAUAA_AAUGGCGGCG_________CCUCUGCUGGCAGCGCAUUU_UGGUCAUUUUUGCGGCGCCAUUGAACA
....(((((((............((..................)).........))))))).................((((..((((..............))))..))))....... (-24.45 = -24.23 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:27:16 2006