Locus 4701

Sequence ID 2R_DroMel_CAF1
Location 15,402,880 – 15,402,983
Length 103
Max. P 0.907804
window7568

overview

Window 8

Location 15,402,880 – 15,402,983
Length 103
Sequences 5
Columns 103
Reading direction reverse
Mean pairwise identity 87.18
Mean single sequence MFE -28.91
Consensus MFE -26.66
Energy contribution -26.98
Covariance contribution 0.32
Combinations/Pair 1.15
Mean z-score -1.65
Structure conservation index 0.92
SVM decision value 1.06
SVM RNA-class probability 0.907804
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 15402880 103 - 20766785
GUAUUUUUGCGGUAGCUCAACUAGAAUACGGCUUUAUUUAGGGGGGUCGAAAUAUCUCAAAGAUUCUUAGAGAAGCACGUAGACGCUAACAGGAGCUAUCUGU
(((....)))((((((((...(((..(((((((((.((((((((....((......)).....))))))))))))).))))....)))....))))))))... ( -28.80)
>DroSec_CAF1 208312 103 - 1
GUAUUUUUGCGGUAGCUCAACUAGAGUACGGCUUUAUUUAGGGGGGUCGAAAUAUAUCAAAGAUCCUUAGAGAAGCACGUAGACGCUAACAGGAGCUAUCUGU
(((....)))((((((((...(((..(((((((((......(((((((.............)))))))...))))).))))....)))....))))))))... ( -30.42)
>DroSim_CAF1 187085 103 - 1
GUAUUUUUGCGGUAGCUCAACUAGAAUACGGCUUUAUUUAGGGGGGUCGAAAUAUCUCAAAGAUCCUUAGAGAAGCACGUAGACGCUAACAGGAGCUAUCUGU
(((....)))((((((((...(((..(((((((((.((((((((....((......)).....))))))))))))).))))....)))....))))))))... ( -31.60)
>DroEre_CAF1 195488 89 - 1
GUAUUUUUGCGGUGGCUCUACAAGUAAACGGCUUUAUUUUGGGGGGUCGACAUAUCUUAAAGAUCCUUAGAGAAGCAC--------------GAGCUAUCUGU
(((....)))((((((((.....(....).(((((...((..((((((.............))))))..)))))))..--------------))))))))... ( -23.12)
>DroYak_CAF1 202277 103 - 1
GUACUUUUGCGGUGGCUCUACAAGAAUAUGGCUUUAUUCAGGGGGGUCGACAUAUCUUAAAGAUCCUUGGAGAAGCACGUAGCCGCUUACAGGAGCUAUCUGU
..........(((((((((..(((..(((((((((.((((..((((((.............))))))))))))))).))))....)))...)))))))))... ( -30.62)
>consensus
GUAUUUUUGCGGUAGCUCAACUAGAAUACGGCUUUAUUUAGGGGGGUCGAAAUAUCUCAAAGAUCCUUAGAGAAGCACGUAGACGCUAACAGGAGCUAUCUGU
(((....)))((((((((...(((..(((((((((.((((..((((((.............))))))))))))))).))))....)))....))))))))... (-26.66 = -26.98 +   0.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:27:12 2006