Locus 4700

Sequence ID 2R_DroMel_CAF1
Location 15,394,228 – 15,394,318
Length 90
Max. P 0.614977
window7567

overview

Window 7

Location 15,394,228 – 15,394,318
Length 90
Sequences 6
Columns 108
Reading direction reverse
Mean pairwise identity 70.00
Mean single sequence MFE -31.28
Consensus MFE -15.45
Energy contribution -15.95
Covariance contribution 0.50
Combinations/Pair 1.28
Mean z-score -1.55
Structure conservation index 0.49
SVM decision value 0.17
SVM RNA-class probability 0.614977
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 15394228 90 - 20766785
GAU------------AAGGAAGAGGAUGAGGAG------UUCCAGUGCGGCUGCACCUGCGAGUUAAAGCAGCAUGCCUAUCCGCACCUCUUCACCUACUUGACACCA
..(------------(((....(((.(((((((------.....((((((..(((.((((........))))..)))....)))))))))))))))).))))...... ( -31.40)
>DroPse_CAF1 228761 108 - 1
GCAAGCAUGACCCCCAACUCCGAAGAGGAGGAGGCGCUCUUUCAGUGUCGCUGCACCUGCGAGAUCAAGCAGCGCGCCUUCCCUCAUCUCUUCACCUACUUGGCUCCC
.((((..((.....)).....((((((((((((((((.((((..((.((((.......)))).))..)).)).))))))..))))..)))))).....))))...... ( -34.10)
>DroEre_CAF1 186996 90 - 1
GAG------------AACGCCGAGGAGGAGGAC------UUCCAGUGCGGCUGCACCUGCGAACUUAAGCAGCAUGCCUAUCCGCACCUCUUCACCUACUUGACGCCA
...------------..((.((((.(((.((..------..)).((((((..(((.((((........))))..)))....)))))).......))).)))).))... ( -28.80)
>DroYak_CAF1 193274 90 - 1
GAG------------AACGUCGAGGAUGAGGAC------UUCCAGUGCGGCUGCACCUGCGAGUUAAAGCAGCAUGCCUAUCCGCACCUCUUCACCUACUUGACGCCA
...------------..(((((((..((((((.------.....((((((..(((.((((........))))..)))....)))))).))))))....)))))))... ( -31.40)
>DroAna_CAF1 177300 93 - 1
GAG------------GCUGCUGAGGAGAAGGACGCCUUGUCCAAAUGUUGCUGCAUGUGCAAAUACAA---GCGUGAUUUUCCUCACCUCUUCACUUACCUGGCACCC
(((------------(....(((((((((..((((.((((.......((((.......))))..))))---))))..))))))))))))).................. ( -27.90)
>DroPer_CAF1 188716 108 - 1
GCAAGCAUGACCCCCAACUCCGAAGAGGAGGAGGCGCUCUUCCAGUGCCGCUGCACUUGCGAGAUCAAGCAGCGCGCCUUCCCUCAUCUCUUCACCUACUUGGCUCCC
.((((..((.....)).....((((((((((((((((......(((((....)))))(((........)))..))))))..))))..)))))).....))))...... ( -34.10)
>consensus
GAG____________AACGCCGAGGAGGAGGAC______UUCCAGUGCGGCUGCACCUGCGAGUUCAAGCAGCAUGCCUAUCCGCACCUCUUCACCUACUUGACACCA
.....................(((((((.(((............((((....))))((((........))))........)))...)))))))............... (-15.45 = -15.95 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:27:10 2006