Locus 470

Sequence ID 2R_DroMel_CAF1
Location 2,660,567 – 2,660,658
Length 91
Max. P 0.510964
window894

overview

Window 4

Location 2,660,567 – 2,660,658
Length 91
Sequences 4
Columns 91
Reading direction reverse
Mean pairwise identity 85.71
Mean single sequence MFE -15.75
Consensus MFE -9.62
Energy contribution -10.25
Covariance contribution 0.63
Combinations/Pair 1.12
Mean z-score -1.88
Structure conservation index 0.61
SVM decision value -0.04
SVM RNA-class probability 0.510964
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 2660567 91 - 20766785
CCUCCAUUAGAUACCACUAAUUCACGGUCUGAGAACUACUCCCAUUUAAAUGGUUUCAAAUCCGACAGACCCACGAAUUGUUUUUAACCCU
.................((((((..((((((..........((((....))))..((......))))))))...))))))........... ( -14.10)
>DroSec_CAF1 93768 91 - 1
CUUCCAUUAGAUACCACUAAUGCUCGGUCUGAAAUCUACUCCCAUUUAAAUGGUUUCAAAUCGGACAGACCCACGAAUUGUUUUUAACACU
....((((((......))))))...((((((..........((((....)))).(((.....))))))))).................... ( -15.10)
>DroSim_CAF1 91840 91 - 1
CCUCCAUUAGAUACCACUAAUGCACGGUCUGAAAACUAAUCCCAUUUAAAUGGUUUCAAAUCGGACAGACCCACGAAUUGUUUUUAACCCU
....((((((......))))))...((..(((((((...((((((....)))).........((......))..))...)))))))..)). ( -15.60)
>DroYak_CAF1 89452 87 - 1
CCUUCAUUAGAUACCAAUAGUAAACGGGUUGAAAACUACA-CCAUGUUAAUGGUUU---ACCCGUCAGACCCACGAAUAGUUUAUAACCCU
.........................((((((.((((((.(-((((....)))))..---...(((.......)))..)))))).)))))). ( -18.20)
>consensus
CCUCCAUUAGAUACCACUAAUGCACGGUCUGAAAACUACUCCCAUUUAAAUGGUUUCAAAUCCGACAGACCCACGAAUUGUUUUUAACCCU
....((((((......))))))...((((((..........((((....))))............)))))).................... ( -9.62 = -10.25 +   0.63)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:23 2006