Locus 47

Sequence ID 2R_DroMel_CAF1
Location 1,297,682 – 1,297,778
Length 96
Max. P 0.705282
window87

overview

Window 7

Location 1,297,682 – 1,297,778
Length 96
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 72.53
Mean single sequence MFE -19.05
Consensus MFE -10.59
Energy contribution -11.40
Covariance contribution 0.81
Combinations/Pair 1.09
Mean z-score -1.75
Structure conservation index 0.56
SVM decision value 0.36
SVM RNA-class probability 0.705282
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 1297682 96 + 20766785
AAGAUUGUACUCAUUUGGUAAUCCAAAGGCAUAAUAGACC------------------------CAUUAAAAUAUAAGAACCGUCGUGAUCAAAGGAGUAAAGUAAAAACGCUUUAAUAU
..(((..(.....(((((....))))).........(((.------------------------..(((.....))).....))))..))).......((((((......)))))).... ( -11.10)
>DroSec_CAF1 25625 89 + 1
AGGACUAUACUCAUUUGGUAAUCCAAAGGCACAAUUUACC------------------------CUUUAAAAUAUGAGAACUGUCGUGAUCAAAUGAGUAAAGUAAAAACGCU-------
...(((.((((((((((((.....(((((..........)------------------------))))....(((((......))))))))))))))))).))).........------- ( -20.70)
>DroSim_CAF1 29823 96 + 1
AAGACUAUACUCAUUUGGUAAUCCAAAGGCACAAUUGACC------------------------CUUUAAAAUAUGAUAACUGUCGUGAUCAAAUGAGUAAAGUAAAAACGCUUUAAGGU
...(((.((((((((((((.....(((((..(....)..)------------------------))))....((((((....)))))))))))))))))).)))................ ( -22.40)
>DroEre_CAF1 34610 119 + 1
CAGAUUAUACUCCUUUGUUAAUCCAAAGGAACAAUUCAACUGAUAAUUCAAAUAUGGAUUGUGCUCUUUAAAUAUGAGAUCUGUCGUGAUUAAAUGAUUA-AGUAAACUCACUUUAAAAU
((((((....(((((((......)))))))((((((((..(((....)))....))))))))...............))))))((((......))))...-................... ( -22.00)
>consensus
AAGACUAUACUCAUUUGGUAAUCCAAAGGCACAAUUGACC________________________CUUUAAAAUAUGAGAACUGUCGUGAUCAAAUGAGUAAAGUAAAAACGCUUUAA_AU
...(((.((((((((((((...((...))...........................................(((((......))))))))))))))))).)))................ (-10.59 = -11.40 +   0.81)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:24:40 2006