| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 15,382,771 – 15,382,868 |
| Length | 97 |
| Max. P | 0.841446 |
| Location | 15,382,771 – 15,382,868 |
|---|---|
| Length | 97 |
| Sequences | 3 |
| Columns | 98 |
| Reading direction | forward |
| Mean pairwise identity | 91.75 |
| Mean single sequence MFE | -22.53 |
| Consensus MFE | -17.15 |
| Energy contribution | -17.48 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -3.37 |
| Structure conservation index | 0.76 |
| SVM decision value | 0.75 |
| SVM RNA-class probability | 0.841446 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 15382771 97 + 20766785 UAGUUGUAUCUUUCCACACGCAGUUAAAAGAAAACUGUUCUGGGUUGAUACCACAUACUUACCGUCU-GGAAAACCAAAAUUAAUACGGUAAUCAAAC ..((.(((((..((((...((((((.......))))))..))))..))))).))....(((((((.(-((....)))........)))))))...... ( -24.10) >DroSec_CAF1 188479 95 + 1 UAGUUGUAUCUUUCCACACUCAGUUAAAACAAAACUGUUCUGGGUUGAUACC---UACCGACCGUGUUUGAAAACCAAAAUAAAUACGGUAAUCAAGC ..((.(((((..((((....(((((.......)))))...))))..))))).---.))..((((((((((..........))))))))))........ ( -23.30) >DroSim_CAF1 166696 95 + 1 UAGUUGUAUCUUUCCACACUCAGUUAAAACAAAACUGUUCUGGGUUGAUACC---UACCUACCGUCUUUGAAAACCAAAAUUAAUACGGUAAUCAAAC ..((.(((((..((((....(((((.......)))))...))))..))))).---.)).((((((..((((.........)))).))))))....... ( -20.20) >consensus UAGUUGUAUCUUUCCACACUCAGUUAAAACAAAACUGUUCUGGGUUGAUACC___UACCUACCGUCUUUGAAAACCAAAAUUAAUACGGUAAUCAAAC .....(((((..((((....(((((.......)))))...))))..)))))........((((((....................))))))....... (-17.15 = -17.48 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:27:04 2006