Locus 4695

Sequence ID 2R_DroMel_CAF1
Location 15,382,260 – 15,382,359
Length 99
Max. P 0.983394
window7558 window7559

overview

Window 8

Location 15,382,260 – 15,382,359
Length 99
Sequences 3
Columns 99
Reading direction forward
Mean pairwise identity 89.90
Mean single sequence MFE -41.83
Consensus MFE -37.95
Energy contribution -39.40
Covariance contribution 1.45
Combinations/Pair 1.03
Mean z-score -4.02
Structure conservation index 0.91
SVM decision value 1.94
SVM RNA-class probability 0.983394
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 15382260 99 + 20766785
UGCUGCCGUGCUGCUGCUGUGCAGCCGCUUUUGCUGCCAAUUGUAAUUGAAUUUUGUGUUGUCGGCAAAGUGGCAACCGUCAGGCAACAGCAGCAGCAG
........((((((((((((((.((((((((.((((.((((...((......))...)))).))))))))))))...(....))).)))))))))))). ( -44.80)
>DroSec_CAF1 187978 99 + 1
UACUGCCGUGCUGCUGCUGUGCAGCCGCUUUUGCUGCCAAUUGUAAUUGAAUUUUGUGUUGUCGGCAAAGUGGCAACCGUCAGGCAACAGCGGCAGCAG
........((((((((((((((.((((((((.((((.((((...((......))...)))).))))))))))))...(....))).)))))))))))). ( -44.10)
>DroYak_CAF1 180960 88 + 1
UG-----------CUGCUGUGCUGCCGCUUUUGCUGCCAAUUGUAAUUGAAUUUUGUGUUGUCGGCAAAGUGGCAACCGUCAGGCAACAGCGGCAACAG
((-----------(((((((..(((((((((.((((.((((...((......))...)))).))))))))))))).((....))..))))))))).... ( -36.60)
>consensus
UGCUGCCGUGCUGCUGCUGUGCAGCCGCUUUUGCUGCCAAUUGUAAUUGAAUUUUGUGUUGUCGGCAAAGUGGCAACCGUCAGGCAACAGCGGCAGCAG
........((((((((((((((.((((((((.((((.((((...((......))...)))).))))))))))))...(....))).)))))))))))). (-37.95 = -39.40 +   1.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 9

Location 15,382,260 – 15,382,359
Length 99
Sequences 3
Columns 99
Reading direction reverse
Mean pairwise identity 89.90
Mean single sequence MFE -35.75
Consensus MFE -27.33
Energy contribution -30.00
Covariance contribution 2.67
Combinations/Pair 1.07
Mean z-score -3.54
Structure conservation index 0.76
SVM decision value 1.04
SVM RNA-class probability 0.905910
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 15382260 99 - 20766785
CUGCUGCUGCUGUUGCCUGACGGUUGCCACUUUGCCGACAACACAAAAUUCAAUUACAAUUGGCAGCAAAAGCGGCUGCACAGCAGCAGCACGGCAGCA
((((((.(((((((((.((.(((((((....(((((((.....................))))))).....)))))))))..))))))))))))))).. ( -39.50)
>DroSec_CAF1 187978 99 - 1
CUGCUGCCGCUGUUGCCUGACGGUUGCCACUUUGCCGACAACACAAAAUUCAAUUACAAUUGGCAGCAAAAGCGGCUGCACAGCAGCAGCACGGCAGUA
.(((((((((((((((.((.(((((((....(((((((.....................))))))).....)))))))))..))))))))..))))))) ( -38.70)
>DroYak_CAF1 180960 88 - 1
CUGUUGCCGCUGUUGCCUGACGGUUGCCACUUUGCCGACAACACAAAAUUCAAUUACAAUUGGCAGCAAAAGCGGCAGCACAGCAG-----------CA
((((((..((((((((......(((((((..(((......................))).)))))))....)))))))).))))))-----------.. ( -29.05)
>consensus
CUGCUGCCGCUGUUGCCUGACGGUUGCCACUUUGCCGACAACACAAAAUUCAAUUACAAUUGGCAGCAAAAGCGGCUGCACAGCAGCAGCACGGCAGCA
.(((((((((((((((.((...((.(((....((((((.....................))))))((....))))).)).))))))))))..))))))) (-27.33 = -30.00 +   2.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:27:03 2006